FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_PICST (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia stipitis GN=TPC1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 54/184 (29.35%), Postives = 82/184 (44.57%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVS---RTEGVRALWKGLTP----FATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            + PY   ++GS+ G V      P+D IK RLQL  +  ++  +     V    + EG  ALWKG  P    +  +   ++T     +         S     S+   L++G GAGV+  L +  PF++++ RL        +LL   G    AR II  EG  GL+AG  P ++   T    MF
Sbjct:   16 VSPYESLLAGSISGAVARAVTAPLDTIKIRLQLQRS-AFRSRVSVTTVVKDLLKNEGAIALWKGNVPAEILYVLYGAAQFTTYSSISRWLSHLSDTSGFNLPSSAHSLVSGTGAGVVSTL-VTYPFDLLRTRLAANS--EKKLLSMSG---TAREIISSEGFTGLFAGIKPAMLSISTTTGLMF 192          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_LODEL (Mitochondrial thiamine pyrophosphate carrier 1 OS=Lodderomyces elongisporus GN=TPC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 55/187 (29.41%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG-----TYK-GIIHCGATVSRTEGVRALWKGLTP----FATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            + PY    +GS+ G V      P+D IK RLQL T       T K   ++    + + EGV ALWKG  P    +  +  +++T     +       KD      S+   L+AG GAG+   L    PF++++ RL   +     LL   G     R I+  EG+ GL+AG  P ++   +    MF
Sbjct:   16 VSPYESLFAGSVSGGVARAITAPLDTIKIRLQLQTKSHKHPHTQKVSALNVVKDLLKNEGVIALWKGNVPAEILYVMYGAVQFTTYSALSKSLSQMEKDYSIVMPSSVHSLLAGVGAGIASTLT-TYPFDLLRTRLVANK--KKNLLSMTGTF---RKILHAEGISGLFAGIRPAMISVASTTGLMF 196          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_CANAL (Mitochondrial thiamine pyrophosphate carrier 1 OS=Candida albicans GN=TPC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 52/185 (28.11%), Postives = 86/185 (46.49%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG--TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAF----KDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRL--QQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            + P    V+GS+ G +      P+D IK RLQL   G    K ++     +   EG+ ALWKG  P      L   ++ GS ++   +      + +    S    L+ G G+G++  L +  PF++++ RL   + RG    LL   G I   + II+ EG+ G++AG  P ++   +    MF
Sbjct:   15 VTPTEALVAGSIAGAISRAFTAPLDTIKIRLQLQPKGFKHRKSVVTIVKNLLENEGIIALWKGNVPAEILYILYGGVQFGSYSIISKSVSKLENNYRINLSSANHSLIVGIGSGIVSTL-VTYPFDLLRTRLIANKNRG----LLSMTGTI---KDIIKLEGIRGIYAGIRPAMLSVSSTTGLMF 191          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCP62_MOUSE (Putative mitochondrial carrier protein FLJ44862 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKI-SNQGR-----LMAGFGAGVLEALAIVTPFEVVKIRLQQQ--------RGL-SPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            V+G +GGV       P+D +KTRLQ      Y    +C   V + E V   +KG++     + +  ++  G  +  Q      + G++ +  GR     L+A    GV+ ++ +  P E++KIRLQ Q         GL S  +  Y+GP+HC   I++ EGL GL+ GA+  ++R+
Sbjct:   10 VAGWIGGVASVIVGYPLDTVKTRLQAGVG--YANTFNCIRMVYKRERVFGFFKGMSFPLASIAIYNSVVFGVFSNTQRFLSKYRCGELEAGPGRSLSDLLLASMLTGVV-SVGLGGPVELIKIRLQMQTQPFREASHGLKSRAVAAYQGPVHCIATIVQMEGLTGLYRGASAMLLRD 183          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTE-GVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQ----GRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA----KNAFD 707
            +SGS+ GVV    L P++V++ RL  +  GTY GI  C   ++ +E  +R  ++GL    T  T+ ++   G N +     K        N+    G+L+       +    +  PF VVK RL  Q G S    KY G       II++EG  GL+ G  P+ M++  + +  F      K AFD
Sbjct:  283 ISGSVAGVVSHTTLFPLEVVRLRLSAEIAGTYNGIFDCFKKIAISEKSIRPFYRGLGASIT-ATIPHS---GVNMMVYEFLKHKVIKMTGNEFPTAGQLLVCASTSSVCGQLVGYPFHVVKSRLITQ-GSSVNQEKYTGLFDGLTKIIKKEGPIGLYKGIVPSFMKSIPSHSITFIVYEGFKKAFD 463          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 52/186 (27.96%), Postives = 81/186 (43.55%), Query Frame = 3
Query:  150 KTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT----YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLK-YKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA 692
            +T P  +K + G L G+     +QP+D++K R+QL   G     YK   H   ++ +TEG++ ++ GL+          T R+G   V       +         + + G  AG   A  + TP EV  IR+     L  +  + YK   +    I REEG+  LW G  PT+ R     AA   +
Sbjct:   17 RTSPKSVKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTSILKTEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAF-VGTPAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVVVNAAQLAS 201          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: CMC1_CAEEL (Probable calcium-binding mitochondrial carrier K02F3.2 OS=Caenorhabditis elegans GN=K02F3.2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLDTTG-------TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTA 692
            GS+ G   A  + PID++KTR+Q   T         YK  + C   V + EG+  L++GL P    +  +  +++  N   +  F  +K GKI   G ++AG G G +  +    P E+VKIRLQ     +   ++  G       +++E G  GL+ G+    +R+    A  F A
Sbjct:  376 GSVAGACGATAVYPIDLVKTRMQNQRTSGSFVGEVMYKNSLDCFKKVVKFEGLLGLYRGLLPQIVGVAPEKAIKLTMNDYMRDKF--TKDGKIPLYGEIIAG-GTGGMCQVVFTNPLEIVKIRLQ-----TAGEVQQAGKKIGVFTVLKELGFLGLYKGSRACFLRDIPFSAIYFPA 544          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: UCP1_SUNMU (Mitochondrial brown fat uncoupling protein 1 OS=Suncus murinus GN=UCP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 53/176 (30.11%), Postives = 78/176 (44.32%), Query Frame = 3
Query:  159 PPYM--KAVSGSLGGVVEACCLQPIDVIKTRLQL-----DTTGT-YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            PP M  K  S  L   +      P+D  K RLQ+     +  G  YKG++   ATV++TEG   L+ GL           +LR+G     Q  F   +    +   ++ AG   G +    I  P EV K+R+Q Q  L     +Y G  +   +I++ EG  GLW G +  + RN
Sbjct:   11 PPTMLVKIASAGLSACLADIITFPLDTAKVRLQVQGERPNAPGVKYKGVLGTIATVAKTEGPLKLYGGLPAGIQRQISFASLRIGLYDTVQEYFNAHRKTPATLGNKISAGLMTGCVTVF-IGQPTEVAKVRMQAQSSLHWLKPRYSGTYNAYYVIVKTEGFLGLWKGTSLNLTRN 185          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC_BOVIN (Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 49/180 (27.22%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  183 GSLGGVVEACCLQPIDVIKTRLQLD-TTGTYKGIIHCGATVSRTEGVRALWKGLTP----FATHLTLKYTLRMGSNAVFQSAF--KDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQ-----QQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            G L   V    + P+DV++TR         YK +     T+ RTEG    +KGL P       +   ++++       ++ A   +  K G   N   L+ G GAGV+    +  P ++ K RLQ     Q R    ++  YKG + CA  ++REEG  G + G +P++++   +   +F
Sbjct:  125 GGLSACVATLAVHPVDVLRTRFAAQGEPRVYKTLRDAVVTMYRTEGPLVFYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNFKN---LLCGSGAGVISK-TLTYPLDLFKKRLQVGGFEQARASFGQVRSYKGLLDCAGQVLREEGAQGCFKGLSPSLLKAALSTGLVF 300          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TPC1_DEBHA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Debaryomyces hansenii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 53/185 (28.65%), Postives = 81/185 (43.78%), Query Frame = 3
Query:  156 IPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG--TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGK-----ISNQGR-LMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            + PY   ++GSL G +    + P+D IK RLQL   G  TYKG      ++ + EGV+ALWKG  P      L   ++  S +    A  + +        ISN    L+AG G+G L +     PF++++ RL          L     I   + I    G+ G   G  P ++   ++   MF
Sbjct:   21 VSPYEALIAGSLSGAIARGIIAPLDTIKIRLQLQIQGYDTYKGASKTFVSICKNEGVKALWKGNVPAEILYILYGAIQFTSYSALSKALSEFEKNNRNLFTISNSTHSLIAGSGSG-LASTFFTYPFDLLRTRLAANS--EAHFLSMSSTI---KSIYEMHGIGGFCKGLTPGLLSVASSTGLMF 199          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TPC1_PICST5.034e-1129.35Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_LODEL5.034e-1129.41Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_CANAL5.034e-1128.11Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCP62_MOUSE5.034e-1129.94Putative mitochondrial carrier protein FLJ44862 ho... [more]
MCFC_DICDI5.034e-1130.11Mitochondrial substrate carrier family protein C O... [more]
M2OM_MOUSE5.034e-1127.96Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
CMC1_CAEEL5.034e-1128.81Probable calcium-binding mitochondrial carrier K02... [more]
UCP1_SUNMU6.575e-1130.11Mitochondrial brown fat uncoupling protein 1 OS=Su... [more]
TPC_BOVIN6.575e-1127.22Mitochondrial thiamine pyrophosphate carrier OS=Bo... [more]
TPC1_DEBHA6.575e-1128.65Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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