FC930769

Overview
NameFC930769
Unique NameFC930769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:203..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.814e-33
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = 2
Query:   77 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 391
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 2
Query:   71 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.316e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = 2
Query:   71 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.032e-29
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.032e-29
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.654e-29
Identity = 59/107 (55.14%), Postives = 81/107 (75.70%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKH 117          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.080e-22
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   71 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            +E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K+DVDEL  VA+E+ V AMPTFVL K GK +ERI+GAKKDEL+  V K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.118e-19
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKVDVD + +VAE   + AMPTF + K+G   + +VGA +D+L+  V KH
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKH 110          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 391
            G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL VDVDEL   +  W ++A PTF   K G+ + ++VGA K ELQ  V
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.043e-17
Identity = 37/100 (37.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   80 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 379
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF   ++G+ ++++VGA K EL
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
The following BLAST results are available for this feature:
BLAST of FC930769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXH_PICMA8.814e-3355.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ6.316e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.316e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL2.032e-2955.14Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA2.032e-2955.14Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA2.654e-2955.14Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH1.080e-2247.71Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE1.118e-1946.30Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH9_ARATH7.244e-1941.35Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC3.043e-1737.00Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34108H01EF PostHarvP1 Citrus clementina cDNA clone C34108H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930769 ID=FC930769; Name=FC930769; organism=Citrus clementina; type=EST; length=566bp
GAAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAAC
TTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCAC
ACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAA
ACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGA
TGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTC
TTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGT
GGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGA
GGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCAC
GCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTAC
ATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTTAA
TGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAATGA
CAATCTTCTAACAAAA
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