FC930769

Overview
NameFC930769
Unique NameFC930769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:203..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.496e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A  KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A  KL+VVDF+A+WC PCK++ P    L++K   V+F++VDVD+ K +A E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.279e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  119 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+ ++ ++
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.279e-15
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-ERIVGAKKDELQLAVEKH 400
            A  KL+V+DFTASWC PC+ ++P   E+AK+ P VIF KVDVDE    AE   ++AMPTF   K GK L + + GA +  L+  ++K+
Sbjct:   18 AGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  155 IVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            +V+DF A+WC PCK+M P L++L +  P V F+K DVDE   +A+E  V AMPTFVL K+G+++ +I+GA    L+  ++
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGIK 125          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.181e-15
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 2
Query:   83 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            +V+   + ESWN  + +       IV  FTA WC P   M+    ELA      +FL VDVDE+K VA +  V+AMPTF+  K+G  ++++VGA  DE++  V+
Sbjct:    3 RVVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.848e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  119 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 391
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+  +
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATI 101          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.720e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            A +KL+VVDF+A+WC PCK++ P    L  K   V+F+++DVD+ + VA    V+ MPTF   K GK ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
The following BLAST results are available for this feature:
BLAST of FC930769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_BOVIN5.739e-1643.02Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MACMU7.496e-1643.02Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CALJA7.496e-1643.02Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_RABIT9.790e-1641.86Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_MOUSE1.279e-1540.63Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_GEOCY1.279e-1547.73Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
TRX3_YEAST1.670e-1546.25Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
TRXL4_ARATH2.181e-1539.42Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_RAT2.848e-1541.94Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_CHICK3.720e-1541.18Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34108H01EF PostHarvP1 Citrus clementina cDNA clone C34108H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930769 ID=FC930769; Name=FC930769; organism=Citrus clementina; type=EST; length=566bp
GAAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAAC
TTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCAC
ACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAA
ACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGA
TGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTC
TTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGT
GGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGA
GGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCAC
GCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTAC
ATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTTAA
TGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAATGA
CAATCTTCTAACAAAA
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