FC930769

Overview
NameFC930769
Unique NameFC930769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:203..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  119 EQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKK 370
            + L+  I   KL+V DF A+WC PCK ++P L  +AK+   VIF+K+DVDE + VAE++ V AMPT ++ K G  +  +VGA +
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANE 96          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15
Identity = 41/107 (38.32%), Postives = 68/107 (63.55%), Query Frame = 2
Query:   83 QVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA--VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            QVIS   ++ +N+    G    K+I++DF A+WC PC+++SPI  + ++K  A  ++F KVDVD    ++EE  + AMPTF + K+G+ ++ +VGA    L+  V+K
Sbjct:    3 QVIS--NLDEFNKLTNSG----KIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQK 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.859e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  116 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 382
            N QL K  A+ KL+V+DF A+WC PCK++SP L+EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   12 NGQLTK--ASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.082e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  137 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            +   KL+VVDF A+WC PCK ++P   + +       F+KVDVD+L  +A E  V AMP+F L K G+ +E IVGA   +L+ +++
Sbjct:   15 VCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.082e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTF-VLTKEGKVLERIVGAKKDELQLAVEK 397
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF    K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATINE 104          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.414e-14
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  137 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            I+  +L++VDF A WC PCK ++P   E +K    ++F+KVDVDE+  V E+  + +MPTF + K G  ++ ++GA    L+  +EK+
Sbjct:   15 ISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKY 102          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            A  K +V+D    WC PCK+M+P   ELA+KL  V+FLK+D + E K +A+E  +  +PTF + K GK+++ + GAK D+L  A+E
Sbjct:  101 AGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.411e-14
Identity = 34/87 (39.08%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  143 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            A  L+++DF A WC PCK+++P+L  L  ++ +V+  KV++D+  + AE++ V ++PT +L K+GK ++R+VG K KD L   + +H
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  149 KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 391
            KL+VVDF A+WC PCK+++P++ + A++     F K+DVDE+  VA++  V +MPT +  K GK + R+VGA    ++ A+
Sbjct:   20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAI 100          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  143 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            A  L++VDF A WC PC++++PIL  LA +LP V   K+++DE    AE + V ++PT +L K+G  + R+VG K K+ L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
The following BLAST results are available for this feature:
BLAST of FC930769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_ECHGR4.859e-1545.24Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_COPCM4.859e-1538.32Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO2_DROYA4.859e-1546.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
TRX1_SCHPO1.082e-1441.86Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_PONAB1.082e-1443.68Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_PLAF71.414e-1438.64Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
TRXF_MESCR2.411e-1444.19Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CHLCV2.411e-1439.08Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX2_YEAST3.149e-1441.98Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO_CHLPN4.113e-1442.53Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC34108H01EF PostHarvP1 Citrus clementina cDNA clone C34108H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930769 ID=FC930769; Name=FC930769; organism=Citrus clementina; type=EST; length=566bp
GAAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAAC
TTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCAC
ACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAA
ACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGA
TGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTC
TTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGT
GGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGA
GGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCAC
GCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTAC
ATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTTAA
TGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAATGA
CAATCTTCTAACAAAA
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