FC930769

Overview
NameFC930769
Unique NameFC930769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:203..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  101 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 367
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  101 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 367
            T E++   ++KG+A     +VDF A WC PCK++SP++ ELA +        KV+ DE + ++ ++ + ++PT + TK+G+V+ ++VG +
Sbjct:    8 TEENFESTIKKGVA-----LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQ 92          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  155 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 397
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  155 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 397
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  155 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 397
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  101 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            T   ++ +++ G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  101 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            T   ++ +++ G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  158 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  158 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  158 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
The following BLAST results are available for this feature:
BLAST of FC930769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_HELPY2.495e-1134.44Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.495e-1134.44Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIOM_RAT2.495e-1140.96Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE2.495e-1140.96Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN2.495e-1140.96Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_STAES3.259e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ3.259e-1134.31Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW3.259e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU3.259e-1139.76Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS3.259e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

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Properties
Property NameValue
Genbank descriptionC34108H01EF PostHarvP1 Citrus clementina cDNA clone C34108H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930769 ID=FC930769; Name=FC930769; organism=Citrus clementina; type=EST; length=566bp
GAAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAAC
TTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCAC
ACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAA
ACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGA
TGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTC
TTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGT
GGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGA
GGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCAC
GCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTAC
ATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTTAA
TGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAATGA
CAATCTTCTAACAAAA
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