FC930778

Overview
NameFC930778
Unique NameFC930778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  298 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDEE--VDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMELT 690
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDEE  VD   +   DIELV+ Q  V +++A+KAL A +GD+V+AIM L+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  298 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDEE--VDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMELT 690
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDEE  VD   +   DIELV+ Q  V +++A+KAL A +GD+V+AIM L+
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKALKAHNGDLVNAIMSLS 173          
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_VANPO (Nascent polypeptide-associated complex subunit alpha OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 53/144 (36.81%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  298 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT-------------QAAEQFKVPPPNTGNVASKPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMELT 690
            KLG+K I G++RVT +K  N +F I  P+V++S   + Y+VFGEAKI++ S +L               +  +  ++     G+ ++KP ++A   D+  VD   +  +DIELV +QA V +++A+KAL   +GDIV+AIM L+
Sbjct:   26 KLGLKKIAGINRVTFRKKDNQIFAIDNPEVYRSQGGN-YVVFGEAKIDNFSQKLAAAQEKIQSVSKSPEEIQKDMQLAADQAGDESAKPAAAAEEDDEAPVDAGDLSAEDIELVASQANVSKNKAIKALKEHNGDIVNAIMALS 168          
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_YARLI (Nascent polypeptide-associated complex subunit alpha OS=Yarrowia lipolytica GN=EGD2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 55/158 (34.81%), Postives = 89/158 (56.33%), Query Frame = 1
Query:  298 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ--AAEQFKVPPPNTGNV-------------ASKPESSAM-------------VQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMEL 687
            KL ++ + G++RV +K+++  +FVI+ P+V+K+PT ++Y+VFGEA+ ED+ +  +    AA Q +     TG+V             ASK  +S                +D+ E D TG+E  DI+LVM QA V R++A+  L   D D+V+ IM+L
Sbjct:   39 KLNLQKVEGITRVVLKRTRQHIFVIANPEVYKTPTGNSYVVFGEAQHEDMQATARAAQIAAAQAQQAAAETGSVSEAAAAGEVGAELASKDPASITADLEAASLSKDEDAEDEAEADATGLEDSDIKLVMEQANVSRNKAINGLKKNDSDVVNTIMDL 196          
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:  289 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ----------------FKVPPPNT---------GNVASKPESSAMVQDDEEVDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMEL 687
            A+  LG+K + G+ RVT+++++N+L V+S P+V+KSP SD YIVFGEAK+ED +S  Q QA  Q                FK   P +            +S P  S    D     +  V  ++I+L++ Q GV  ++A +A  +  GD+++AIM+L
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQAQAQLAASSQAAQQAHAHGGFKEGVPKSLEELMQDAPSTDSSAPAPSGEATDASASGDFKVSDEEIQLIVAQTGVDEAKAREAYISEKGDLINAIMKL 190          
BLAST of FC930778 vs. ExPASy Swiss-Prot
Match: NACA_CANGA (Nascent polypeptide-associated complex subunit alpha OS=Candida glabrata GN=EGD2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 52/142 (36.62%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  298 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQL---QTQAAEQFKVPPPNTGNVASKPESSAMVQD--------DEEVDETGVEPKDIELVMTQAGVPRSRAVKALXAADGDIVSAIMELT 690
            KLG+K +PG+ RVT +K  N +F I KP+VF+S     Y+VFGEAK+++ + +L   Q QA  Q     P   ++ +  +++A+  +        +E+VD   +   DI+LV+ Q    + +A+KAL   +GDIV+AIM L+
Sbjct:   26 KLGLKKVPGIIRVTFRKKDNQIFAIEKPEVFRS-VGGNYVVFGEAKVDNFTQRLAAAQQQAQSQTATKTPE--DIQADMQAAAVANENKTEGDAAEEDVDAGDLSNDDIDLVVQQTNATKGQAIKALKEHNGDIVNAIMSLS 164          
The following BLAST results are available for this feature:
BLAST of FC930778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_YEAST1.846e-1938.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS71.846e-1938.93Nascent polypeptide-associated complex subunit alp... [more]
NACA_VANPO4.112e-1936.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_YARLI7.014e-1934.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_CRYNE1.563e-1834.81Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANGA1.323e-1736.62Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC34108H11EF PostHarvP1 Citrus clementina cDNA clone C34108H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930778 ID=FC930778; Name=FC930778; organism=Citrus clementina; type=EST; length=736bp
GAATCGGGCATTTAGGGTTTTAGTCTTCTCTCTTTCGTGTCCGCTTCTCG
TTCTCAAGTCTCAACACCCAGCCCAAAAAAAATGACTGCTCAGTCTCAAG
AAGAGCTCCTCGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCGATGAG
CCTGTAGTCGAGGACGACGATGATGAGGATGATGATGAGGAGGATGAGGA
TGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAGTGGTC
GCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGTTGAAA
CTTGGAATGAAGCCAATCCCTGGCGTCAGTCGAGTTACAGTTAAAAAGAG
CAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAGTCCTA
CATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATCTGAGT
TCACAACTGCAAACTCAGGCTGCAGAGCAGTTCAAGGTCCCTCCTCCTAA
CACAGGTAATGTGGCATCAAAGCCTGAGTCATCGGCCATGGTTCAAGATG
ACGAAGAAGTAGATGAGACTGGTGTGGAGCCAAAGGACATTGAGTTGGTA
ATGACTCAAGCTGGGGTACCGAGGTCAAGGGCTGTGAAAGCACTCNAAGC
CGCAGATGGTGACATCGTTTCTGCCATTATGGAGCTAACAAATTGATGGT
CACTTTCTTAATTTATGTGCTCTGCTGAATGATCCC
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