FC930780

Overview
NameFC930780
Unique NameFC930780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:11..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930780 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 2 
Query:  254 IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKNSAEVKDGVLYITI 682
            I D F   R++ QM+  M+++ E P        + +    SG RRG   W ++E ++   +R+D+PG+SR DVK+ +E++ LVI+ E          G T  EE E  S     +++RI LP+ V + ++  AE+K+GVL + I
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV-----SATRGMGASGVRRG---WNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGE----------GET--EEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVI 193
The following BLAST results are available for this feature:
BLAST of FC930780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS235_ARATH3.035e-1133.3323.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC34109A01EF PostHarvP1 Citrus clementina cDNA clone C34109A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930780 ID=FC930780; Name=FC930780; organism=Citrus clementina; type=EST; length=723bp
GATTGGTGACATCTCTCAATCAAAAACTATATCTTAGAAAATGGCATCTC
ATCTTGGTATCTGTACTCCCTGTGCGTCCGAAATAATCACCGGTTTTCCC
AGCTACAGGTCTCCACCTTTGTTGAGAAATAGAGACTTTTGTGGCAGGAT
AAAGGCCGTGGCAGATAACAGAGGCAGCCTTGATCACTTGCAAAGATCGT
CGCTGAATCAATCCCAGCCAAAAAAGAGAGCGGCCCCAGTTTCATCTCCA
GGGATATGGGATAGTTTTCCTGCTGCGAGGACGGTGCAACAGATGATGGA
AACCATGGAAAGAATAATGGAGGATCCTTTTGCTTACGGAGTCACTTGGC
CTTCACAACAAGAAAGGGTGAGAAGTGGATACAGACGGGGAAGAACGCCT
TGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGGTTAGACGTGCC
TGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGAGAGCATGCTCG
TAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACACTGATGGAAGT
ACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTACGGAAGCTACAG
CACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAAGAATTCAGCAG
AGGTGAAAGATGGCGTACTGTATATAACCATTCCAAGGCCAGCTCCACGC
CNAAATCGTCGACATTAATGTCC
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