FC930781

Overview
NameFC930781
Unique NameFC930781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.178e-11
Identity = 32/99 (32.32%), Postives = 46/99 (46.46%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSKSVKQRAYW 699
            G  PN VT++  I    K  N+E A K YR M N+G  P+   Y  ++  +   G  E A G   E   K WVP+   +  L+  L G + +V +   W
Sbjct:  494 GCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPD-EPVYGLLVDLWGKAGNVDKAWQW 591          

HSP 2 Score: 38.1206 bits (87), Expect = 7.178e-11
Identity = 28/123 (22.76%), Postives = 52/123 (42.28%), Query Frame = 2
Query:   35 AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            AK + E+ ++  E  +  G KP+  TYNR+I ++           +  +M     +P+  ++  L+    K    +    + Q M+  G+      Y+V I+ L K      A  L  EM+ +
Sbjct:  372 AKQFGEINKLLDEMVRD-GCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQ 493          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR54_ARATH (Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.273e-11
Identity = 36/124 (29.03%), Postives = 58/124 (46.77%), Query Frame = 2
Query:   35 AKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKE 406
            A +  E ++VF E  K  GI+P++ TY+ VI A C          + A+M      PNA +F  L+    K  + E V +V   M++ G +     YN  I + C+      A  +L+ M+ K+
Sbjct:  268 AGEISEAEKVFKEM-KLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390          

HSP 2 Score: 31.9574 bits (71), Expect = 7.273e-11
Identity = 17/66 (25.76%), Postives = 30/66 (45.45%), Query Frame = 1
Query:  409 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESI 606
            +PN+VTY+  +  F    + +   K  + M +  + PN + Y  +V   C  G +  A    KE +
Sbjct:  427 EPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMV 492          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP150_ARATH (Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 7.285e-11
Identity = 24/89 (26.97%), Postives = 45/89 (50.56%), Query Frame = 1
Query:  409 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSK 675
            KP++ TY+  +  F   G  E  K+ +  +  S   P+   Y ++V+ +C    ++ A G+  E I +G++P   T ++L  GL   +K
Sbjct:  389 KPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNK 477          

HSP 2 Score: 41.9726 bits (97), Expect = 7.285e-11
Identity = 25/113 (22.12%), Postives = 51/113 (45.13%), Query Frame = 2
Query:   89 GIKPDLDTYNRVIKAFCE----------XXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            GI+P++ TYN ++   C                    +  EM ++ I+P+ +SF  ++  + +  K E     +++M+  G+   +  Y   +  LC   +  EA+ LL+ M+
Sbjct:  237 GIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMV 349          
The following BLAST results are available for this feature:
BLAST of FC930781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PP123_ARATH7.178e-1132.32Pentatricopeptide repeat-containing protein At1g74... [more]
PPR54_ARATH7.273e-1129.03Pentatricopeptide repeat-containing protein At1g20... [more]
PP150_ARATH7.285e-1126.97Pentatricopeptide repeat-containing protein At2g13... [more]

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Properties
Property NameValue
Genbank descriptionC34109A02EF PostHarvP1 Citrus clementina cDNA clone C34109A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930781 ID=FC930781; Name=FC930781; organism=Citrus clementina; type=EST; length=701bp
GGCTTTCAACGCTTTGTTGTTGGCTCTCACGATAGCCAAAGACTACAAAG
AAGTTAAACGGGTATTTATCGAATTTCCCAAGACTTACGGAATCAAGCCG
GATTTGGATACCTACAACAGGGTAATTAAGGCGTTTTGTGAGTCCAGTGA
TTCAAGTTCTGCAGACTCGATTTTGGCTGAAATGGATAGGAAGTCGATTA
AACCAAACGCCTCGAGTTTTGGAGCTTTGGTGGCTGGGTTTTATAAGGAG
GAGAAGTATGAAGATGTGAATAAAGTCTTGCAAATGATGGAAAGATATGG
GATGAAGTCTGGGGTTAGTATGTATAATGTGAGGATTCATAGCCTTTGTA
AGTTAAGAAAGTGTGCAGAAGCTAAGGCATTGCTTGATGAGATGTTGTCT
AAGGAATGAAGCCGAATTCAGTCACTTATAGCCATTTCATTTATGGGTTC
TGCAAAGATGGGAATTTTGAAGAAGCTAAGAAGTTTTATAGGATTATGAG
TAACAGTGGGTTGTCGCCAAATAGCTCTGTATATTTTACTATGGTGTATT
TCATGTGTAAAGGTGGGGATTATGAGACAGCACTGGGCTTCTGCAAGGAG
AGTATAGCGAAGGGTTGGGTGCCTAATTTCACGACTATGAAATCATTGGT
GACTGGGCTGGCTGGTGTTTCAAAGTCAGTGAAGCAAAGAGCTTATTGGC
C
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