FC930781

Overview
NameFC930781
Unique NameFC930781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 8.546e-13
Identity = 27/99 (27.27%), Postives = 47/99 (47.47%), Query Frame = 2
Query:  101 DLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            D+  Y  +I   C+         ++ EM +  ++ N+    AL+ G  ++ +  + +  L+ M + G +  V  YN+ I  LCK  K  EA A + EML
Sbjct:  428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526          

HSP 2 Score: 42.743 bits (99), Expect = 8.546e-13
Identity = 23/99 (23.23%), Postives = 42/99 (42.42%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSKSVKQRAYW 699
            G KP+  TYS  + G C+D   + A + +     SGL  +  ++  +++ +C  G  + A+        +    N  T  +L+ G   V  S +    W
Sbjct:  529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIW 627          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 1.118e-12
Identity = 44/167 (26.35%), Postives = 66/167 (39.52%), Query Frame = 2
Query:    2 AFNALLLALTIAKDYKEVKRVFIEF-------PKTY--------------------------GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            AFN LL AL  +K+ ++ + VF           KTY                          G  PD+ TY+ ++   C+         I+  MD    KP    +  LV  +  E + E+       MER GMK+ V+++N  I + CK  +      +L EM SK
Sbjct:  205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK 371          

HSP 2 Score: 36.1946 bits (82), Expect = 1.118e-12
Identity = 20/80 (25.00%), Postives = 37/80 (46.25%), Query Frame = 1
Query:  409 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 648
            +P++ TY+  I  FC+    E A K ++ M   G+ P+   +  ++  +C+    + A    +E I  G  P+  T   L
Sbjct:  408 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 487          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.444e-12
Identity = 31/116 (26.72%), Postives = 55/116 (47.41%), Query Frame = 2
Query:   53 VKRVF--IEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            +KRV   ++    +GIKP L  +N ++    +            +M    I  +  ++G L+ G     +  D  K+LQ+M+  G+     +YN  +H+LCK  K   A++L+ EM
Sbjct:  128 IKRVISVVDLVSKFGIKPSLKVFNSILDVLVKEDIDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEM 243          

HSP 2 Score: 36.1946 bits (82), Expect = 1.444e-12
Identity = 24/89 (26.97%), Postives = 36/89 (40.45%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGV 669
            G  P+ VT +  +   C +G   EA +    + + G   +     T+V   C  G    A  F  E   KG++PN  T   L+ G   V
Sbjct:  278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDV 366          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP158_ARATH (Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.070e-12
Identity = 31/133 (23.31%), Postives = 60/133 (45.11%), Query Frame = 2
Query:    5 FNALLLALTIAKDYKEVKRVF--IEFPKTYGI-KPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            FN+ + AL       +  R+F  +E  +  G+ +P+  TYN ++K FC+         +   +       +  S+   + G  +  K+ +   VL+ M   G+   +  YN+ +  LCKL   ++AK ++  M
Sbjct:  255 FNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM 387          

HSP 2 Score: 41.9726 bits (97), Expect = 4.070e-12
Identity = 23/88 (26.14%), Postives = 42/88 (47.73%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666
            G+ P++VTY   ++G+C  G  + AK   + M  +   PN+     +++ + K G    A    ++   KG+  +  T   +V GL G
Sbjct:  391 GVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478          

HSP 3 Score: 56.6102 bits (135), Expect = 1.948e-11
Identity = 29/102 (28.43%), Postives = 52/102 (50.98%), Query Frame = 2
Query:   89 GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            GI P   T+N +I+A C+         +  EM  K  KPN  +FG LV G+ K    +   ++L  ME +G+     +YN  + S C+  +  +++ ++++M
Sbjct:  142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKM 243          

HSP 4 Score: 32.3426 bits (72), Expect = 1.948e-11
Identity = 22/64 (34.38%), Postives = 31/64 (48.44%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---GL-SPNSSVYFTMVYFMCKGGDYETA 582
            G+ P+ VT++  I   CK+G   +A + +  M      GL  PNS  Y  M+   CK G  E A
Sbjct:  247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDA 310          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR67_ARATH (Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.095e-12
Identity = 27/87 (31.03%), Postives = 43/87 (49.43%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 663
            G+ PN VTY+  I G C+DG   EA   Y  +   G+ P+   Y +++   CK G+  +     ++ I  G+ P+      LV GL+
Sbjct:  386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLS 472          

HSP 2 Score: 38.1206 bits (87), Expect = 4.095e-12
Identity = 28/130 (21.54%), Postives = 55/130 (42.31%), Query Frame = 2
Query:    8 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            N +L  L++  D  EV    +      G  P++ T+  +I  FC+         +   M+++ I+P+  ++  L+ G++K       +K+       G+K  V +++  I    K    A A  +   ML
Sbjct:  256 NKVLKGLSV--DQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRML 383          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.126e-12
Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = 2
Query:   38 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            +D    ++VF E  +   +  DL  YN ++ A C+         +  EM    +KP+A SF   +  +          KVL  M+RY +   V  +N  I +LCK  K  +A  LLDEM+ K
Sbjct:  222 RDASGARKVFDEMLERNCVV-DLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQK 342          

HSP 2 Score: 32.7278 bits (73), Expect = 4.126e-12
Identity = 23/86 (26.74%), Postives = 39/86 (45.35%), Query Frame = 1
Query:  412 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY-FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666
            P+  TY+  +    + G F+ A + +  MS     P  + Y  M++  + K G  E A  + +  I +G  P  TT++ L   L G
Sbjct:  381 PDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVG 466          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.365e-12
Identity = 28/103 (27.18%), Postives = 48/103 (46.60%), Query Frame = 2
Query:   95 KPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            KPD+ T+N +I  +C          +  EM  K  +PN  SF  L+ GF    K E+  K+   M   G +   +   + +  LC+  +  +A  L+ ++L+K
Sbjct:  225 KPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNK 327          

HSP 2 Score: 38.1206 bits (87), Expect = 5.365e-12
Identity = 23/85 (27.06%), Postives = 39/85 (45.88%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 657
            G  P  +  +  + G  K G  E+A  F   M N+G+ P+S  +  ++  +C       A      + +KG+ P+ TT   LV+G
Sbjct:  363 GQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSG 447          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 6.922e-12
Identity = 30/88 (34.09%), Postives = 41/88 (46.59%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666
            GM P+S TY+  I+G C   N +EA + +  M   GL  NS  Y  M+  + K G  + A G   E   KG    +T    + T L G
Sbjct:  534 GMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG----YTIDNKVYTALIG 617          

HSP 2 Score: 40.0466 bits (92), Expect = 6.922e-12
Identity = 26/102 (25.49%), Postives = 42/102 (41.18%), Query Frame = 2
Query:   89 GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            G + D+ T N +   F            L  M    +K +  S+  L+  + KE   E+  ++   M   G++     YNV I++ CK  K  EA+ L   M
Sbjct:  429 GFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANM 530          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 6.928e-12
Identity = 24/83 (28.92%), Postives = 38/83 (45.78%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 651
            G+ P + TY+HF   F K    EE    Y  +  +G SP+   Y  ++  +C+ G    A+   KE   +G  P+  T   L+
Sbjct:  385 GVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLI 467          

HSP 2 Score: 44.669 bits (104), Expect = 6.928e-12
Identity = 33/136 (24.26%), Postives = 65/136 (47.79%), Query Frame = 2
Query:    5 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-KSG--VSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            FN LL     ++  K+ ++++ E  K   +KP + TY  +I+ +C          +L EM    ++ N   F  ++ G  +  +   +++ L MMER+ + +SG  +  YN  + + CK      A  +L  M+++
Sbjct:  253 FNILLNGWFRSRKLKQAEKLWEEM-KAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR---LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTR 384          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 8.917e-12
Identity = 27/103 (26.21%), Postives = 47/103 (45.63%), Query Frame = 2
Query:   98 PDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKE 406
            PD+  Y+ +IKA C+         +  EM  K +KP  +++ +++ G+ KE + +     +  M        V  Y   IH LC   + +EA    +EM  K+
Sbjct:  612 PDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKD 714          

HSP 2 Score: 45.0542 bits (105), Expect = 8.917e-12
Identity = 22/71 (30.99%), Postives = 34/71 (47.89%), Query Frame = 1
Query:  412 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 624
            PN +T+   I G CK G   EA  ++R M    + P+S+VY ++V       +     G  +E + KG  P
Sbjct:  717 PNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFP 787          
The following BLAST results are available for this feature:
BLAST of FC930781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PP221_ARATH8.546e-1327.27Pentatricopeptide repeat-containing protein At3g09... [more]
PP129_ARATH1.118e-1226.35Pentatricopeptide repeat-containing protein At1g77... [more]
PP160_ARATH1.444e-1226.72Pentatricopeptide repeat-containing protein At2g17... [more]
PP158_ARATH4.070e-1223.31Pentatricopeptide repeat-containing protein At2g17... [more]
PPR67_ARATH4.095e-1231.03Putative pentatricopeptide repeat-containing prote... [more]
PPR78_ARATH4.126e-1230.33Pentatricopeptide repeat-containing protein At1g52... [more]
PP187_ARATH5.365e-1227.18Pentatricopeptide repeat-containing protein At2g36... [more]
PP180_ARATH6.922e-1234.09Pentatricopeptide repeat-containing protein At2g32... [more]
PP375_ARATH6.928e-1228.92Pentatricopeptide repeat-containing protein At5g11... [more]
PP368_ARATH8.917e-1226.21Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC34109A02EF PostHarvP1 Citrus clementina cDNA clone C34109A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930781 ID=FC930781; Name=FC930781; organism=Citrus clementina; type=EST; length=701bp
GGCTTTCAACGCTTTGTTGTTGGCTCTCACGATAGCCAAAGACTACAAAG
AAGTTAAACGGGTATTTATCGAATTTCCCAAGACTTACGGAATCAAGCCG
GATTTGGATACCTACAACAGGGTAATTAAGGCGTTTTGTGAGTCCAGTGA
TTCAAGTTCTGCAGACTCGATTTTGGCTGAAATGGATAGGAAGTCGATTA
AACCAAACGCCTCGAGTTTTGGAGCTTTGGTGGCTGGGTTTTATAAGGAG
GAGAAGTATGAAGATGTGAATAAAGTCTTGCAAATGATGGAAAGATATGG
GATGAAGTCTGGGGTTAGTATGTATAATGTGAGGATTCATAGCCTTTGTA
AGTTAAGAAAGTGTGCAGAAGCTAAGGCATTGCTTGATGAGATGTTGTCT
AAGGAATGAAGCCGAATTCAGTCACTTATAGCCATTTCATTTATGGGTTC
TGCAAAGATGGGAATTTTGAAGAAGCTAAGAAGTTTTATAGGATTATGAG
TAACAGTGGGTTGTCGCCAAATAGCTCTGTATATTTTACTATGGTGTATT
TCATGTGTAAAGGTGGGGATTATGAGACAGCACTGGGCTTCTGCAAGGAG
AGTATAGCGAAGGGTTGGGTGCCTAATTTCACGACTATGAAATCATTGGT
GACTGGGCTGGCTGGTGTTTCAAAGTCAGTGAAGCAAAGAGCTTATTGGC
C
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