FC930811

Overview
NameFC930811
Unique NameFC930811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:32..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  183 IPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWAD--LFSMLTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKSLAENLISXMGEVLNIKDEEM------REFFEKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            +PV+DM+              +    ++WG F L  HG+    L +++  + G F L   EK +  + PGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E+++LA+ L+      L +  E++      ++  E  +A M +N+YP CP P++ +GL  H
Sbjct:   49 VPVVDMRDPCAAEA-------VALAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAH 229          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 52/181 (28.73%), Postives = 89/181 (49.17%), Query Frame = 3
Query:  186 PVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            PVIDM+             K+   C+ WGFF+LVNHG+S   ++ +++  +  +N  ME++ K       +E      V SE   LDW   F +  LPV        P L    R+ ++ ++ +L+ LAE L+  + E + ++   +++ F   +  +   +++ YPPCP+PE   GL  H
Sbjct:    5 PVIDMEKLNGEERAPTME-KIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEA-----VQSEINDLDWESTFFLRHLPV--SNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAH 177          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 45/160 (28.12%), Postives = 72/160 (45.00%), Query Frame = 3
Query:  243 KLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQH-PGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            K+    ++WGFFQ++NHG+    LEK+   +  F     E KK ++   P     +   F +      +W D     T P     P     LP +  E +  YS E+  L + L   + E L +    +++     S  +  +YYPPCPQP+  +GL+ H
Sbjct:   83 KIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAP----DPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKH 238          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 51/185 (27.57%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  177 SQIPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAA----MRMNYYPPCPQPEKXMGLSPH 719
            S  PVI+M+             +LD  C+ WGFF+++NHG+ST  +++++K  +  +    E++   +      EG      V++ +KLDW   F +  LP         P L    R  ++ ++ EL++LAE L+  + E L ++   + + F   + A     +++ YPPCP+P+   GL  H
Sbjct:    5 STFPVINMELLAGEERPAAME-QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDD---VNKAEKLDWESTFFVRHLPESNIAD--IPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAH 183          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 56/212 (26.42%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  114 VPDRYIRPDQDSPLIS----DDTLISQIPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVH-LRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMR----EFFEKWS-AAMRMNYYPPCPQPEKXMGLSPH 719
            +PD Y    +D  L S           IP+ID+              ++   C+ WG FQ+ NHG+    L+ ++      F L ++ K K  +    + G+G A + S   K  W++ F++   P++  RK  L+P+   +  + +E Y   +K LA  L+      L + +E++          W+ AA+++N+YP CP+P++ MGL+ H
Sbjct:   30 LPDSYKWTPKDDLLFSAAPSPPATGENIPLIDLDHPDATN-------QIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRK--LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAH 232          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 58/188 (30.85%), Postives = 87/188 (46.28%), Query Frame = 3
Query:  183 IPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSME--EKKKYWQHPGDM--EGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSA-----AMRMNYYPPCPQPEKXMGLSPH 719
            IPVID              A++   C+EWGFFQLVNHG+    LE++KK     + L  E  E  K  Q    +  EG GQ         +DW D+F        L+  + +P  PP   ET++ Y  E++ LAE ++  M E L  +   +++ F            ++++YPPCP+ +   GL  H
Sbjct:    3 IPVIDFSKLDGKERAETM-ARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECYKLREERFEGSKPVQLLDTLVKEGDGQRL-----DNVDWEDVFV-------LQDDNEWPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAH 177          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 51/185 (27.57%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  177 SQIPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAA----MRMNYYPPCPQPEKXMGLSPH 719
            S  PVI+M+             +LD  C+ WGFF+++NHG+ST  +++++K  +  +    E++   +      EG      V++ +KLDW   F +  LP         P L    R  ++ ++ EL++LAE L+  + E L ++   + + F   + A     +++ YPPCP+P+   GL  H
Sbjct:    5 STFPVINMELLAGEERPAAME-QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDD---VNKAEKLDWESTFFVRHLPESNIAD--IPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAH 183          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 53/190 (27.89%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  183 IPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWAD--LFSMLTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKSLAENLISXMGEVLNIKDEEM------REFFEKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            +PV+DM+              +    ++WG F L  HG+    L  ++  + G F L   EK +  + PGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E+++LA+ L+      L +  E++       +  E  +A M +N+YP CP P++ +GL  H
Sbjct:   49 VPVVDMRDPCAAEA-------VALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAH 229          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 3
Query:  180 QIPVIDMQXXXXXXXXXXXXAK--LDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            ++PVID+              K  +    +EWGFFQ++NHG+S   LEK+++E    F    ++K K  +       +G     S  Q L W++ F +    +   K         +L  T+E ++ E ++LA  L   + E         +E   + +  +RMN YPPCP+P +  GL PH
Sbjct:   41 ELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQ-LSWSEAFHVPMTDISDNKDFT------TLSSTMEKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPH 215          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 63/247 (25.51%), Postives = 95/247 (38.46%), Query Frame = 3
Query:    3 YKAAAILKGFEEQKMAQIGSSLLVPCVQELVKNPALVVPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXA--KLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKL------DWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            +  A+ LK F+E K    G       V   +     +     +      PL SD   +  IP ID+             A   +     +WGFFQ++NHG+S   LEK+K  V  F     E +K  +        FG+ F+      L      +W D F     P     P     LP   R+ +  YS ++  L E L   + E L +    +++        M  +Y+PPCP+P+   G S H
Sbjct:   10 FDRASELKAFDETKTGVKG------LVDSGISKIPRIFHHSSVELANPKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRD-----FGRKFIYLSNFDLYTAAAANWRDTFYCYMAP----DPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKH 241          
The following BLAST results are available for this feature:
BLAST of FC930811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
G3O22_WHEAT1.390e-1427.89Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
ACCO_ACTDE2.371e-1428.731-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCH1_ARATH3.096e-1428.131-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO1_ORYSI4.044e-1427.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
G3OX1_ARATH5.281e-1426.42Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO_MUSAC5.281e-1430.851-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
ACCO1_ORYSJ5.281e-1427.571-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
G3O21_WHEAT6.897e-1427.89Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G2OX8_ARATH6.897e-1428.02Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCH2_ARATH9.008e-1425.511-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC34109C08EF PostHarvP1 Citrus clementina cDNA clone C34109C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930811 ID=FC930811; Name=FC930811; organism=Citrus clementina; type=EST; length=744bp
AATACAAAGCTGCAGCAATCTTGAAAGGATTTGAGGAACAAAAGATGGCC
CAGATTGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGTCAAGAA
TCCTGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCAC
CACTCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACATG
CAAAGCTTACTTTCTGAAGAATCAATGGATTCTGAGCTAGCCAAGCTCGA
CTTCACATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATGA
GCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAAT
CTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCATCCAGGAGATATGGA
AGGCTTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGGG
CTGACCTTTTCTCCATGCTGACTCTTCCAGTTCATCTGAGGAAGCCACAC
TTATTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACTC
AATGGAATTAAAATCCCTAGCCGAGAACCTAATATCGAANATGGGAGAAG
TGTTAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAAATGGAGT
GCAGCAATGAGGATGAATTATTACCCTCCATGTCCTCAGCCCGAGAAGGN
TATGGGCCTGTCGCCACATCTGATGCAGCTGCACTTACCATCTG
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