FC930811

Overview
NameFC930811
Unique NameFC930811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:32..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 49/192 (25.52%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  129 IRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLP--VHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQ 689
            ++P + +PL +       IPV+D+                   C+++GFF+LVNHG+    +  L+ E   FF  S  EK +    P D  G+G    +     + W +   + T P  +  +   +F + P   R  +E Y   +K++   ++  M E L I+           EK  +  R+N+YPPCP+
Sbjct:   15 LKPFKSTPLFTG------IPVVDLTHPDAKNLIVN-------ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDR--AGPPDPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPE 190          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  240 AKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHP--GDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAM-----RMNYYPPCPQPEKXMGLSPH 719
            A L   C+ WG ++L+NHG+S   + +++   +  +    E++ K +       +E         E + LDW   F +  LP         P L    R T++ +++EL++LAE L+  + E L ++   +++ F   S  +     +++ YPPCP+PE   GL  H
Sbjct:   24 ALLRDACENWGLYELLNHGISHELMNRVETVNKEHYRRFREQRFKEFASKTLDTVENV-------EPENLDWESTFFLRHLPT--SNISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAH 181          
The following BLAST results are available for this feature:
BLAST of FC930811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
G2OX_PHACN9.322e-1125.52Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
ACCO1_DORSP9.322e-1126.351-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]

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Properties
Property NameValue
Genbank descriptionC34109C08EF PostHarvP1 Citrus clementina cDNA clone C34109C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930811 ID=FC930811; Name=FC930811; organism=Citrus clementina; type=EST; length=744bp
AATACAAAGCTGCAGCAATCTTGAAAGGATTTGAGGAACAAAAGATGGCC
CAGATTGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGTCAAGAA
TCCTGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCAC
CACTCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACATG
CAAAGCTTACTTTCTGAAGAATCAATGGATTCTGAGCTAGCCAAGCTCGA
CTTCACATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATGA
GCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAAT
CTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCATCCAGGAGATATGGA
AGGCTTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGGG
CTGACCTTTTCTCCATGCTGACTCTTCCAGTTCATCTGAGGAAGCCACAC
TTATTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACTC
AATGGAATTAAAATCCCTAGCCGAGAACCTAATATCGAANATGGGAGAAG
TGTTAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAAATGGAGT
GCAGCAATGAGGATGAATTATTACCCTCCATGTCCTCAGCCCGAGAAGGN
TATGGGCCTGTCGCCACATCTGATGCAGCTGCACTTACCATCTG
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