FC930819

Overview
NameFC930819
Unique NameFC930819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15220 contig Ccv1_Contig15220:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.069e-90
Identity = 162/230 (70.43%), Postives = 188/230 (81.74%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRA 689
            VA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  I YEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A
Sbjct:  178 VAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKA 407          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.110e-90
Identity = 160/229 (69.87%), Postives = 181/229 (79.04%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 683
            V + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  217 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.110e-90
Identity = 160/229 (69.87%), Postives = 181/229 (79.04%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 683
            V + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  217 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.110e-90
Identity = 160/229 (69.87%), Postives = 181/229 (79.04%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 683
            V + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQ ++E ++K++F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  217 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 445          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 330.872 bits (847), Expect = 4.062e-90
Identity = 160/229 (69.87%), Postives = 181/229 (79.04%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 683
            V + MYNTDESI  FA +    + QKKWPLYLSTKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  217 VGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.062e-90
Identity = 161/229 (70.31%), Postives = 186/229 (81.22%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLR 686
            VA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   I T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+
Sbjct:  178 VAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLK 406          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 5.305e-90
Identity = 160/229 (69.87%), Postives = 186/229 (81.22%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLR 686
            VA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F   LE   + T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+
Sbjct:  178 VAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEARKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSVETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLK 406          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 6.928e-90
Identity = 159/229 (69.43%), Postives = 181/229 (79.04%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 683
            V + MYNTDESI  FA +    + QKKWPLYLSTKNTI+K YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  217 VGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTIMKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTIKSNL 445          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.633e-89
Identity = 163/227 (71.81%), Postives = 188/227 (82.82%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVAD 677
            VAL MYNTD SI+ FA A  N +  KKWPLYLSTKNTILK+YDGRFKDIFQE+YE  +K KF+ AGIWYEHRLIDDMVAYA+KSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL+  D  ++ AEA+HGTVTRH+R HQKG ETSTNSIASIFAW+RGL +RAKLDNN +LL F   LEA+CI  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA+
Sbjct:  179 VALGMYNTDASIKEFAYACFNFSLDKKWPLYLSTKNTILKRYDGRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVWACKNYDGDVQSDAVAQGYGSLGLMTSVLLSAD--SLVAEASHGTVTRHFREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAE 403          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.550e-84
Identity = 150/225 (66.67%), Postives = 180/225 (80.00%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 677
            VA+ MYNT  SI AFA +    A  KK+PLYLSTKNTILKKYDG+FKDIFQE+YE  + +KF   GIWYEHRLIDDMVA+ALKSEGG+VWACKNYDGDVQSD +AQG+GSLGLMTSVL   DG    +EA+HGTVTRH+R HQKG ETSTNS+ASIFAW+  L  R KLDNN  L+ F + +E AC+ ++ESG MTKDLA+ I G+++ R +YLNTEE+I+ VA+
Sbjct:  199 VAMGMYNTTSSITAFAHSCFQYAIDKKYPLYLSTKNTILKKYDGQFKDIFQEIYEREYSTKFGELGIWYEHRLIDDMVAFALKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLTNADG-VFASEASHGTVTRHFREHQKGNETSTNSVASIFAWTSALGQRGKLDNNKDLVKFAQDMEKACVESIESGFMTKDLAICIKGNQVKRSNYLNTEEYINKVAE 422          
The following BLAST results are available for this feature:
BLAST of FC930819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_MOUSE1.069e-9070.43Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHP_MACFA3.110e-9069.87Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN3.110e-9069.87Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN3.110e-9069.87Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE4.062e-9069.87Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_HUMAN4.062e-9070.31Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_PONAB5.305e-9069.87Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHP_RAT6.928e-9069.43Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_DICDI2.633e-8971.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHP_DICDI2.550e-8466.67Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34109D04EF PostHarvP1 Citrus clementina cDNA clone C34109D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930819 ID=FC930819; Name=FC930819; organism=Citrus clementina; type=EST; length=700bp
GAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCCGAGCTTTTGCT
GAGGCTTCTATGAACACTGCCTATCAGAAGAAGTGGCCACTCTATCTTAG
TACAAAAAACACTATCCTTAAGAAGTATGATGGAAGATTCAAAGACATAT
TTCAAGAGGTTTATGAGGCAAACTGGAAGTCAAAGTTTGAAGCTGCTGGC
ATATGGTATGAACATCGTCTCATTGATGATATGGTAGCTTATGCTCTCAA
AAGTGAAGGAGGTTATGTGTGGGCTTGCAAAAATTATGATGGAGATGTCC
AGAGTGATTTCCTAGCTCAAGGGTTTGGATCTCTTGGATTGATGACATCT
GTACTGGTATGCCCTGATGGGAAGACAATTGAAGCCGAAGCAGCCCATGG
AACAGTTACCCGACACTACAGAGTTCATCAGAAAGGTGGTGAAACTAGCA
CAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTGCACATAGG
GCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAGAAACTAGA
AGCTGCATGTATTGGCACTGTTGAATCTGGGAAGATGACCAAGGATCTTG
CACTTATTATCCATGGATCTAAGATGACTAGGGAACACTATCTGAATACT
GAAGAGTTCATTGATGCTGTGGCCGACGATCTAAGAGCAGACTCTCTGGC
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