FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 2.357e-11
Identity = 25/67 (37.31%), Postives = 34/67 (50.75%), Query Frame = 2
Query:  323 PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP------SKDAPMFVVGVNEHEYKP 505
            P ++PW + G E V+E+TG++                VIISAP      SK     V+GVNEHE+ P
Sbjct:   86 PSQLPWKDLGIEVVIEATGIYA-NESSYGHLEAGAKRVIISAPAKSSDASKPVKTIVMGVNEHEFDP 151          

HSP 2 Score: 43.8986 bits (102), Expect = 2.357e-11
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGH-GSTMN 254
            +++ INGFGRIGRLV + + ++     + ++ AV D      Y  Y  KYDSV G  GS+++
Sbjct:    1 MRVAINGFGRIGRLVLQAMAEQKLLGKEFDVAAVVDLSTDARYFAYQLKYDSVQGKMGSSLS 62          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 46.9802 bits (110), Expect = 2.360e-11
Identity = 25/87 (28.74%), Postives = 44/87 (50.57%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFT-----XXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYKPEL 511
            D  ++   + + +   R+P+ +PWA+ G + V+ESTGVF+                    VI++ P+KD     V+GVN+H+   +L
Sbjct:   59 DGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDL 145          

HSP 2 Score: 42.3578 bits (98), Expect = 2.360e-11
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+ INGFGRIGR V ++  +R  +++VA+ND       + ++ KYDS  G
Sbjct:    1 MKLAINGFGRIGRNVFKIAFER-GIDIVAIND-LTDPKTLAHLLKYDSTFG 49          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 39/108 (36.11%), Postives = 53/108 (49.07%), Query Frame = 2
Query:  185 YHNRLHDIHV*VRQCSRSWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 505
            Y  R   +H   +    + K      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP S  A   V+GVN HEY P
Sbjct:   48 YQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNP 155          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 3.045e-11
Identity = 28/70 (40.00%), Postives = 35/70 (50.00%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 499
            K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN   Y
Sbjct:  141 KVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGKGDIPTYVVGVNADAY 210          

HSP 2 Score: 35.8094 bits (81), Expect = 3.045e-11
Identity = 21/54 (38.89%), Postives = 32/54 (59.26%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G
Sbjct:   70 QLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLG 122          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 37/108 (34.26%), Postives = 53/108 (49.07%), Query Frame = 2
Query:  185 YHNRLHDIHV*VRQCSRSWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 505
            Y  +   +H   +    + K      KDD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP S  A  FV+GVN + Y P
Sbjct:   48 YQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNP 155          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_TREPA2.357e-1137.31Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
G3P_BORBU2.360e-1128.74Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3PG_TRYCR2.559e-1136.11Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PA_PEA3.045e-1140.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PG_TRYBB7.446e-1134.26Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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