FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.774e-33
Identity = 43/81 (53.09%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D  L+   K + VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFVVGVN   YKP++
Sbjct:   63 DGGLIIDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPDM 143          

HSP 2 Score: 79.337 bits (194), Expect = 2.774e-33
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R  L+  +VE+VAVNDPFI T+Y  YMFKYDS HG
Sbjct:    3 IKVGINGFGRIGRIVLRNALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.774e-33
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            MGKVK+GINGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG  HG+
Sbjct:    1 MGKVKVGINGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59          

HSP 2 Score: 80.8777 bits (198), Expect = 2.774e-33
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   57 HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.613e-33
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            MGKVK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG  HG+
Sbjct:    1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59          

HSP 2 Score: 80.8777 bits (198), Expect = 3.613e-33
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G  P+T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   57 HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 144          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.129e-33
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   90 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +GINGFGRIGRLV R+ L RDD+ ++A+NDPFI  DY  YMFKYDS HG
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHG 53          

HSP 2 Score: 80.4925 bits (197), Expect = 6.129e-33
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            + K L+   K + VF  R+P  IPW + G +YV++STGVFT               VII+APSKDAPMFVVGVN  EY P++
Sbjct:   62 EGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSKDAPMFVVGVNHEEYTPDI 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.296e-32
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++ +KD K  + G   +TVF  R+P EIPWA   A+Y+VE+TGVFT               V+ISAPSKDAPMFV GVNE +Y P+L
Sbjct:   59 DVSIKDGKLQVDGNS-ITVFAHRDPAEIPWATAAADYIVEATGVFTLKDKAAAHFKGGAKKVVISAPSKDAPMFVCGVNEAKYTPDL 144          

HSP 2 Score: 75.0998 bits (183), Expect = 2.296e-32
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGRLV R  +++   ++VA+NDPFI  DYM YM KYDS HG
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.893e-32
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + V  +  RNPEEIPWAETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN   Y  +L
Sbjct:   67 LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSYTTDL 144          

HSP 2 Score: 74.3294 bits (181), Expect = 3.893e-32
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  +K+GINGFGRIGR+V R   Q  +VE+VAVNDPFI  +Y  YM KYDS HG
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.071e-32
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  LQ  ++E+VA+NDPFI  DYM YMFKYD+VHG
Sbjct:    3 VKVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHG 53          

HSP 2 Score: 77.411 bits (189), Expect = 5.071e-32
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++VKD K ++ G   +TVF  +NP +I W   GA+Y+VESTGVFT               V+ISAPS DAPMFVVGVN  +Y
Sbjct:   59 VEVKDGKLVVDGHA-ITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPSADAPMFVVGVNLDKY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.603e-32
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  LQ  D+E+VAVNDPFI  +YM YMFKYDSVHG
Sbjct:    2 VKVGINGFGRIGRIVLRNALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHG 52          

HSP 2 Score: 75.485 bits (184), Expect = 6.603e-32
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++VK+   ++ G +P+ VF  R+P  IPW   GA+YVVESTGVFT               V+ISAPS DAPM+V GVN  +Y P+
Sbjct:   58 VEVKNGSFVVDG-RPMKVFAERDPAAIPWGSVGADYVVESTGVFTTIDKASAHLKGGAKKVVISAPSADAPMYVCGVNLDKYNPK 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.608e-32
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K K+GINGFGRIGRL  R  +++D V++VA+NDPFI  DYM YMF YDS HG
Sbjct:    1 MVKPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHG 54          

HSP 2 Score: 78.5666 bits (192), Expect = 6.608e-32
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            + VF +++P EI WAE GAEYV+ESTGVFT               V+ISAPS DAPM+V+GVNE +Y P
Sbjct:   79 IKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.599e-32
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K KIGINGFGRIGRLV R  +++D VE+VAVNDPFI  DYM YMFKYDS HG
Sbjct:    1 MSKPKIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHG 54          

HSP 2 Score: 71.2478 bits (173), Expect = 8.599e-32
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            + V   ++P EIPW   GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y
Sbjct:   78 IAVHNSKDPAEIPWGVEGAEYVVESTGVFTHTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNDKY 144          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_YARLI2.774e-3353.09Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PONAB2.774e-3364.41Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_HUMAN3.613e-3362.71Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_PICAN6.129e-3369.39Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_CHOCR2.296e-3249.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ERYGR3.893e-3255.13Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_SCHCO5.071e-3270.59Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P2_AGABI6.603e-3274.51Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P1_GLORO6.608e-3264.81Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_ONCVO8.599e-3274.07Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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