FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.120e-31
Identity = 42/78 (53.85%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            D K L+   K V  +  RNP +I W+ETGAEYVVESTGVFT               VIISAPS DAPM+V+GVNE +Y
Sbjct:   63 DGKDLVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVFTTTEKAKAHLVGGAKKVIISAPSADAPMYVMGVNESDY 140          

HSP 2 Score: 76.6406 bits (187), Expect = 1.120e-31
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  +K+GINGFGRIGR+V R  ++  D+E+VAVNDPFI T Y  YM KYDS HG
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.120e-31
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            +++KD K ++ G KP+ V+G R+P  I W   GA+YVVESTGVFT               V+ISAPS DAPMFV GVN  +Y P+
Sbjct:   59 VEIKDGKLVIEG-KPIVVYGERDPANIQWGAAGADYVVESTGVFTTQEKAELHLKGGAKKVVISAPSADAPMFVCGVNLDKYDPK 142          

HSP 2 Score: 77.0258 bits (188), Expect = 1.120e-31
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  +   D+++VA+NDPFI  +YM YMFKYDS HG
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.120e-31
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   55 HGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 75.8702 bits (185), Expect = 1.120e-31
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG  HG+
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 57          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.900e-31
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G KP+T+F  R+P  I W E GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 75.8702 bits (185), Expect = 1.900e-31
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+G+NGFGRIGRLV R  +    VE+VA+NDPFI  +YM YMF+YDS HG
Sbjct:    2 VKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.900e-31
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G KP+T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 77.0258 bits (188), Expect = 1.900e-31
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+G+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMF+YDS HG
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.474e-31
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            VKIG+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMFKYDS HG  HG+
Sbjct:    2 VKIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRFHGT 57          

HSP 2 Score: 77.411 bits (189), Expect = 2.474e-31
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G+  +T+F  R+P  I W + GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y   L
Sbjct:   55 HGTVKAENGKLVINGQA-ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.221e-31
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            K +TVF  R+P  IPW + G +YV+ESTGVFT               V+I+APSKDAPMFVVGVNE +Y  +L
Sbjct:   71 KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKYTSDL 143          

HSP 2 Score: 76.6406 bits (187), Expect = 3.221e-31
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVH 233
            + +GINGFGRIGRLV RV L R D+++VA+NDPFI  +Y  YMFKYDS H
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTH 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.221e-31
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HGH
Sbjct:    2 VKVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGH 53          

HSP 2 Score: 77.411 bits (189), Expect = 3.221e-31
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G   +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVINGNA-ITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.221e-31
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HGH
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGH 53          

HSP 2 Score: 77.411 bits (189), Expect = 3.221e-31
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G   +T+F  R+P  I WA+ GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVINGHA-ITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.193e-31
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K K+GINGFGRIGRLV R  +++D V++VAVNDPFI  DYM YMFKYDS HG
Sbjct:    1 MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHG 54          

HSP 2 Score: 70.4774 bits (171), Expect = 4.193e-31
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++V   ++P EIPW   GAEYVVESTGVFT               VIISAPS DAPMFV+GVN   Y
Sbjct:   78 ISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P2_TRIKO1.120e-3153.85Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_PHARH1.120e-3148.24Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_FELCA1.120e-3148.31Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_MOUSE1.900e-3150.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_RAT1.900e-3148.84Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_TRISI2.474e-3166.07Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_PICPA3.221e-3152.05Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COLLI3.221e-3165.38Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_CHICK3.221e-3165.38Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_BRUMA4.193e-3170.37Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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