FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.193e-31
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++ DDVE+VAVNDPFI T Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHG 53          

HSP 2 Score: 76.2554 bits (186), Expect = 4.193e-31
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +++      L    K +  +  R+P  IPW + G +YVVESTGVFT               VIISAPS DAPMFV+GVNE  Y+P++
Sbjct:   58 DIQHSSSNNLTVNNKTIHFYQERDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPSADAPMFVMGVNEKSYRPDI 144          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.112e-31
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK GINGFGRIGR+V R  L   D+++VAVNDPFI  +YM YMFKYDSVHG
Sbjct:    3 VKAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHG 53          

HSP 2 Score: 76.6406 bits (187), Expect = 7.112e-31
Identity = 41/82 (50.00%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++ KD K  + G KP+ VF  ++P  IPW   GAEY+VESTGVFT               VIISAPS DAPMFV GVN   Y
Sbjct:   59 VEAKDGKLYVEG-KPIHVFAEKDPANIPWGSVGAEYIVESTGVFTTTEKASAHLKGVCKKVIISAPSADAPMFVCGVNLDAY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.112e-31
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  +K+GINGFGRIGR+V R  ++  DVE+VAVNDPFI T Y  YM KYDS HG
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHG 54          

HSP 2 Score: 77.0258 bits (188), Expect = 7.112e-31
Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  263 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            +D   L+   K V  +  R+P  IPW ETGA+YVVESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:   62 QDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.262e-31
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HGH
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGH 53          

HSP 2 Score: 75.8702 bits (185), Expect = 9.262e-31
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G   +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVINGNA-ITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.568e-30
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G   +T+F  R+P +I W + GAEYVVESTGVFT               VIISAPS+DAPMFV+GVN  +Y   L
Sbjct:   88 VKAENGKLVINGHA-ITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSRDAPMFVMGVNHEKYDKSL 172          

HSP 2 Score: 76.6406 bits (187), Expect = 1.568e-30
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMFKYDS HG
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.570e-30
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D  TL+   K +  +  R+P +IPW+ETGAEYVVESTGVFT               VIISAPS D+PMFV+GVN  +Y  ++
Sbjct:   63 DGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSSDSPMFVMGVNNDQYTKDI 144          

HSP 2 Score: 71.2478 bits (173), Expect = 1.570e-30
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  ++ + V++VAVNDPFI   Y  YM KYDS HG
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.570e-30
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            E+K +D   ++ G+K +TVF    PE IPW++ GAEY+VESTGVFT               VIISAPS DAPMFV GVN  +Y  ++
Sbjct:   55 EVKAEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDM 140          

HSP 2 Score: 72.7886 bits (177), Expect = 1.570e-30
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG
Sbjct:    2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHG 50          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.045e-30
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:   71 KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          

HSP 2 Score: 75.485 bits (184), Expect = 2.045e-30
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.045e-30
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            K V  +  R+P  IPWAETGA+YV+ESTGVFT               VIISAPS DAPMFV+GVN   YK ++
Sbjct:   71 KHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNETYKSDI 143          

HSP 2 Score: 75.485 bits (184), Expect = 2.045e-30
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.045e-30
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   55 HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 74.7146 bits (182), Expect = 2.045e-30
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG  HG+
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGT 57          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_PARBA4.193e-3170.59Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PHACH7.112e-3170.59Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_COLLN7.112e-3164.81Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_COTJA9.262e-3165.38Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P1_JACOR1.568e-3046.51Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_MONAN1.570e-3048.78Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_PANVR1.570e-3048.28Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_COCP72.045e-3053.42Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM2.045e-3053.42Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_RABIT2.045e-3047.19Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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