FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.297e-29
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG
Sbjct:    1 MSKPTVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHG 54          

HSP 2 Score: 70.4774 bits (171), Expect = 1.297e-29
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            + V+  ++P EI W   GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:   79 IKVYNSKDPAEIQWGAAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.297e-29
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M   K+GINGFGRIGR+V R  ++ DD+++VAVNDPFI T+Y  YM KYDS HG
Sbjct:    1 MAPTKVGINGFGRIGRIVFRNAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHG 54          

HSP 2 Score: 71.2478 bits (173), Expect = 1.297e-29
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++KV  D   + G+K V  +  R+P  IPWAE+ A YVVESTGVFT               V+ISAPS DAPM+V+GVN   Y  E
Sbjct:   59 DIKVLSDGLEVNGKK-VKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMYVMGVNNETYNGE 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.297e-29
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHG 53          

HSP 2 Score: 75.0998 bits (183), Expect = 1.297e-29
Identity = 41/87 (47.13%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++KV D   L    K V     ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:   58 DIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSADAPMFVMGVNHETYKSDI 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.689e-29
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            L+ G K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:   66 LVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMYVMGVNEKTY 139          

HSP 2 Score: 73.1738 bits (178), Expect = 1.689e-29
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+GINGFGRIGR+V R   +  DVE+VAVNDPFI   Y  YM KYDS HG+
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGN 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.199e-29
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++GINGFGRIGR+V R      DV++VA+NDPFI  DYM YM KYD+VHG
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKDVQVVAINDPFIPLDYMVYMLKYDTVHG 53          

HSP 2 Score: 74.3294 bits (181), Expect = 2.199e-29
Identity = 41/85 (48.24%), Postives = 48/85 (56.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++ KD K ++ G   + V   R+P  IPW   GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YK E
Sbjct:   59 VEAKDGKLVVNGHA-IAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAPSADAPMFVCGVNLEAYKSE 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.864e-29
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  L   +V +VAVNDPFI  +YM YMFKYDSVHG
Sbjct:    3 VKVGINGFGRIGRIVLRNALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHG 53          

HSP 2 Score: 71.2478 bits (173), Expect = 2.864e-29
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++ K  K ++ G K ++VFG ++   IPW+  GAEY+VESTGVFT               VIISAPS DAPM+V GVN   Y
Sbjct:   59 VETKGGKLIVDG-KEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEKASAHLKGGAKKVIISAPSADAPMYVCGVNLDSY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.864e-29
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            K VT +  R+P  IPW + G EYVVESTGVFT               VIISAPS DAPMFV+GVNE  Y P +
Sbjct:   71 KAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNEKTYDPSV 143          

HSP 2 Score: 73.559 bits (179), Expect = 2.864e-29
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  +V +VAVNDPFI T Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.864e-29
Identity = 40/82 (48.78%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D   L+   K +TVF  R+P  I WA  GAEY+VESTGVFT               V+ISAPS DAPMFV GVN   Y P++
Sbjct:   60 DGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPSADAPMFVCGVNLEAYSPDM 141          

HSP 2 Score: 72.7886 bits (177), Expect = 2.864e-29
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  L +   E+VAVNDPFI  +YM Y+FKYDS HG
Sbjct:    3 KIGINGFGRIGRLVLRAALDKG-AEVVAVNDPFIDVNYMVYLFKYDSTHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.728e-29
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  +K+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHG 54          

HSP 2 Score: 72.4034 bits (176), Expect = 3.728e-29
Identity = 38/79 (48.10%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  263 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++   L+   K V  +  R+P  IPW ETGA+YVVESTGVFT               VIISAPS DAPM+V+ VNE  Y
Sbjct:   62 QEGNDLVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPSADAPMYVMVVNEKSY 140          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.728e-29
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+GINGFGRIGR+V R  ++ DD+++VAVNDPFI   Y  YM +YDS HG+
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIQIVAVNDPFIEPKYAEYMLRYDSTHGN 54          

HSP 2 Score: 74.3294 bits (181), Expect = 3.728e-29
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            L+   K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+V+GVN   Y
Sbjct:   66 LVVNGKKVKFYTERDPSAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNESY 139          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P2_CAEBR1.297e-2964.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_SCLSC1.297e-2962.96Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_CURLU1.297e-2966.67Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_CRYPA1.689e-2952.70Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P1_RHIRA2.199e-2964.71Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_LENED2.864e-2970.59Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_AJECA2.864e-2953.42Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_GLOMM2.864e-2948.78Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_COLGL3.728e-2962.96Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_SORMA3.728e-2961.54Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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