FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.729e-29
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            E+ ++D K L+  +  ++VF    P EIPW + GA+YVVESTGVF                V++SAPS DAPMFV+GVNE ++ P
Sbjct:   58 EVSMEDGK-LIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKFDP 141          

HSP 2 Score: 72.7886 bits (177), Expect = 3.729e-29
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  + +GINGFGRIGRLV R  LQ+  +++VA+NDPFI   YM YMFKYDS HG
Sbjct:    1 MSDLCVGINGFGRIGRLVLRACLQKG-IKVVAINDPFIDLQYMVYMFKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.729e-29
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            L+   K V  +  R+P  IPW +TGAEY+VESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:   66 LIVNGKTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEKASAHLKGGAKRVIISAPSADAPMYVMGVNEKTY 139          

HSP 2 Score: 74.3294 bits (181), Expect = 3.729e-29
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  DVE+VAVNDPFI   Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.729e-29
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V+I INGFGRIGRLV RV L R ++E+VAVNDPFITTDY  YMFKYDS HG
Sbjct:    2 VRIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHG 52          

HSP 2 Score: 64.3142 bits (155), Expect = 3.729e-29
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            DDK ++   K + V   R+P  +PW     +  ++STGVF                V+I+APS  APMFVVGVNE +Y  +L
Sbjct:   61 DDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTSDL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.853e-29
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HG
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54          

HSP 2 Score: 63.929 bits (154), Expect = 4.853e-29
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+VVGVN  +Y
Sbjct:   79 IKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.853e-29
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K  +GINGFGRIGRLV R  +++D V++VAVNDPFIT DYM Y+FKYDS HG
Sbjct:    1 MSKANVGINGFGRIGRLVLRAAVEKDTVQVVAVNDPFITIDYMVYLFKYDSTHG 54          

HSP 2 Score: 63.929 bits (154), Expect = 4.853e-29
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            + VF  ++P  I W    A++VVESTGVFT               VIISAPS DAPM+VVGVN  +Y
Sbjct:   79 IKVFNSKDPAAIAWGSVKADFVVESTGVFTTKEKASAHLQGGAKKVIISAPSADAPMYVVGVNHEKY 145          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.320e-29
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHG 53          

HSP 2 Score: 73.559 bits (179), Expect = 6.320e-29
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++KV+ +   + G K +  +  ++P  IPW+ETGA YVVESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:   58 DIKVEGNDLTING-KTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPSADAPMFVMGVNNETYTKDI 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.228e-29
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            D   L+   K V  +  R+P  IPW+ETGA+Y+VESTGVFT               VIISAPS DAPM+V+GVN   Y
Sbjct:   62 DGADLVVNGKKVKFYTERDPAAIPWSETGADYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMYVMGVNNETY 139          

HSP 2 Score: 73.559 bits (179), Expect = 8.228e-29
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            VK+GINGFGRIGR+V R  ++ DD+ +VAVNDPFI   Y  YM +YD+ HG+
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGN 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.071e-28
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK GINGFGRIGR+V R  L   +VE+VA+NDPFI  +YM YMFKYDS HG
Sbjct:    3 VKAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHG 53          

HSP 2 Score: 70.4774 bits (171), Expect = 1.071e-28
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++ KD K ++ G KP++V+  R+P  IP    GAEY+VESTGVFT               VIISAPS DAPMFVVGVN   Y  ++
Sbjct:   59 VEAKDGKLVVNG-KPISVYAERDPCCIP-GRIGAEYIVESTGVFTTKEKAGAHLTGGAKKVIISAPSADAPMFVVGVNLESYSSDM 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.071e-28
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++  KD K ++ G K + VF  ++P  IPW + GA YVVESTGVFT               V+ISAPS DAPM+V GVN   Y P+
Sbjct:   59 DISTKDGKLIVNG-KSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAPSADAPMYVCGVNLDAYDPK 143          

HSP 2 Score: 70.8626 bits (172), Expect = 1.071e-28
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M +V IGINGFGRIGR+V R  +  +   +VA+NDPFI  +YM YM KYDS HG
Sbjct:    1 MSQVNIGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.071e-28
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  +    +++VAVNDPFI  DYM YMFKYDS HG
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHG 54          

HSP 2 Score: 73.1738 bits (178), Expect = 1.071e-28
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            ++ K  K ++ G   + V   R+P  I W+ +GAEYV+ESTGVFT               VIISAPSKDAPMFVVGVN  ++ P
Sbjct:   60 VETKGGKLVIDGHS-IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNP 142          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_ONCMY3.729e-2944.71Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_PODAN3.729e-2951.35Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P2_CANGA3.729e-2976.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P4_CAEEL4.853e-2968.52Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_CAEEL4.853e-2968.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_PHANO6.320e-2966.67Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_NEUCR8.228e-2948.72Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_RHIMI1.071e-2868.63Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_USTMA1.071e-2845.35Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P2_SCHPO1.071e-2866.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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