FC930827

Overview
NameFC930827
Unique NameFC930827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length424
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15222 contig Ccv1_Contig15222:1..424. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_KLULA (60S ribosomal protein L39 OS=Kluyveromyces lactis GN=RPL39 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.099e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 193
            M + K+F+IK+KLAK   QNRP+P W R++T+N IRYNAKRRHWRRTKLG
Sbjct:    1 MAAKKSFIIKQKLAKAKNQNRPLPQWYRLKTNNKIRYNAKRRHWRRTKLG 50
[Close]
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_YEAST (60S ribosomal protein L39 OS=Saccharomyces cerevisiae GN=RPL39 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 2 
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 190
            M + K+F IK+K+AK  +QNRP+P WIR+RT+NTIRYNAKRR+WRRTK+
Sbjct:    1 MAAQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKM 49
[Close]
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_CAEEL (60S ribosomal protein L39 OS=Caenorhabditis elegans GN=rpl-39 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.938e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 190
            M + K   IK+KLAKK +QNRP+P W+RM+T NT++YNAKRRHWRRTKL
Sbjct:    1 MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKL 49
The following BLAST results are available for this feature:
BLAST of FC930827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL39_KLULA5.099e-1568.0060S ribosomal protein L39 OS=Kluyveromyces lactis ... [more]
RL39_YEAST8.698e-1567.3560S ribosomal protein L39 OS=Saccharomyces cerevis... [more]
RL39_CAEEL1.938e-1467.3560S ribosomal protein L39 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC34109E01EF PostHarvP1 Citrus clementina cDNA clone C34109E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930827 ID=FC930827; Name=FC930827; organism=Citrus clementina; type=EST; length=424bp
GAACTAGGGTTTTCGCTGCTCCCGATCGAACTAAGAAGCGAAAATGCCGT
CACACAAGACATTTATGATCAAGAAGAAGCTTGCCAAGAAGATGAGGCAA
AACAGGCCCATCCCTCACTGGATCCGTATGCGCACCGACAACACCATCAG
ATACAACGCAAAGCGCAGGCACTGGCGCCGCACAAAGCTTGGATTCTAAG
GTGTTTAGGATCAGATGGATTTGTTGTTGAGTTTGTTTTAAGCTTATGTT
CGAGTAATTTAGACTATGATACCTGGCCTTATGTTTTATATTTAGTTTTG
AGAAACTCATTTGTATAAGGAACTCATTGAGAGTCCTTATTTTATTTTGT
GCCCTCTTGAGTTAATTTGGACTTATGAAATTTGACTTGTTTCGACCAAN
AAAAAAAAAAAAAAAAAAAAAAAA
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