FC930882

Overview
NameFC930882
Unique NameFC930882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3806 contig Ccv1_Contig3806:1..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of FC930882 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   75 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 302
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  303 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 530
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of FC930882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBIQ_HUMAN1.470e-3496.05Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE1.470e-3496.05Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO1.470e-3496.05Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA1.470e-3496.05Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME1.470e-3496.05Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR1.470e-3496.05Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK1.470e-3496.05Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA1.470e-3496.05Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO1.470e-3496.05Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA1.470e-3496.05Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110A10EF PostHarvP1 Citrus clementina cDNA clone C34110A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930882 ID=FC930882; Name=FC930882; organism=Citrus clementina; type=EST; length=622bp
GATCTTTCTCATTACTCTCTCAAACAATTGTAAAATCTCTCTCGTTGCTC
GCTAGATAAACAACCTTTGTCAATATGCAGATCTTCGTGAAAACCCTAAC
CGGCAAAACGATCACTCTCGAAGTGGAGAGCTCTGACACAATCGACAACG
TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGATCAGCAGCGT
CTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA
CAACATCCAGAAGGAGTCAACGCTCCACCTCGTGCTCAGGCTCCGTGGTG
GCATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAG
GTCGAGAGCTCCGACACGATCGATAACGTGAAGGCCAAGATCCAAGACAA
GGAGGGAATCCCTCCCGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAAT
TGGAAGACGGCCGCACCTTGGCCGATTACAACATCCAAAAAGAATCCACC
TTGCATCTTGTCCTCAGGCTCCGTGGTGGCATGCAGATCTTCGTCAAAAC
CCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCCGATACGATTG
ATAATGTCAAGGCCAAAGATCC
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