FC930886

Overview
NameFC930886
Unique NameFC930886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:50..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_DROME (Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.218e-67
Identity = 131/171 (76.61%), Postives = 145/171 (84.80%), Query Frame = 1
Query:  175 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC++ +CPRP  + +  S K+D+  C      NC    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQP TSEHLAA+EIM
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSKDDSLPCT---RLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIM 179          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_DICDI (Eukaryotic translation initiation factor 2 subunit 3 OS=Dictyostelium discoideum GN=eif2s3 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.918e-66
Identity = 125/171 (73.10%), Postives = 142/171 (83.04%), Query Frame = 1
Query:  169 SRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            ++  L  QD+  L+V +L PL+P VISRQATINIGTIGHVAHGKSTVVKAISGV TVRF +E +RNITIKLGYANAKIYKC++ +C RP CYK+  S  EDNP C+ PG    RM LLRHVSFVDCPGHD+LMATMLNGAA+MD ALLLIA NESCPQP TSEH+AA+EIM
Sbjct:    5 NKPNLSVQDVKLLNVNELTPLTPNVISRQATINIGTIGHVAHGKSTVVKAISGVLTVRFTSEFKRNITIKLGYANAKIYKCDNPQCERPGCYKSARSNTEDNPQCERPGCGG-RMTLLRHVSFVDCPGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQTSEHIAAIEIM 174          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_ENCCU (Eukaryotic translation initiation factor 2 subunit gamma OS=Encephalitozoon cuniculi GN=ECU01_0700 PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 6.932e-55
Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 1
Query:  238 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            E++ +QAT+NIGTIGHVAHGKST+VKAISG+ T++FK ELERNITIKLGYANAKIYKC D +C RP CY+++GS   D   C   G     +KL+RHVSFVDCPGHD+LMATMLNG AIMD  LLLIAANE CPQP T+EHL AVEIM
Sbjct:    6 EIMKKQATLNIGTIGHVAHGKSTIVKAISGISTIKFKAELERNITIKLGYANAKIYKC-DSKCVRPNCYQSFGSSSPDRLSCKKCG---GTLKLVRHVSFVDCPGHDVLMATMLNGTAIMDAVLLLIAANEPCPQPQTTEHLFAVEIM 149          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_AERPE (Translation initiation factor 2 subunit gamma OS=Aeropyrum pernix GN=eif2g PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.165e-34
Identity = 72/144 (50.00%), Postives = 97/144 (67.36%), Query Frame = 1
Query:  250 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            RQ  +NIG +GHV HGK+T+V+A++GV T+R   E+ R +TIKLGYA+ ++++CE    P               P+C+          L R VS+VD PGH+ILMATML+GAA+MDGALL++AANE CPQP T EHL A+EI+
Sbjct:    7 RQPEVNIGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEGCGFPERF---------SPEPVCECD--PQASASLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQTKEHLVALEII 139          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METTH (Translation initiation factor 2 subunit gamma OS=Methanobacterium thermoautotrophicum GN=eif2g PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  244 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            +  Q+ INIG +GHV HGK+T+ KA+SGV T     E +R I+I+LGYA+    KC   +C  PMCY           +C+  G E    +LLR VSFVD PGH+ LMATML+GAA+MDGA+L+IAANE CPQP T EHL A++++
Sbjct:    1 MKNQSEINIGLVGHVDHGKTTLTKALSGVWTDTHSEETKRGISIRLGYADITFRKCP--QCEAPMCYTTA-------EICERCGTET---ELLRKVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDVI 134          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METAC (Translation initiation factor 2 subunit gamma OS=Methanosarcina acetivorans GN=eif2g PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.963e-33
Identity = 78/156 (50.00%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  220 LHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            LH         Q  +NIG +GHV HGK+T+VKA+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQP T EHL A++I+
Sbjct:   27 LHSTGGNYNLSQPCVNIGMVGHVDHGKTTLVKALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPAPQCYTV-------EKTCP-----NCGEKTEEHRIVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEECPQPQTKEHLMALDII 168          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_ARCFU (Translation initiation factor 2 subunit gamma OS=Archaeoglobus fulgidus GN=eif2g PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.963e-33
Identity = 75/140 (53.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            +NIG +GHV HGK+T+V A+SGV T R   EL+R I+IKLGYA+A   KC +  C  P  Y           +C + G E    ++LR VSFVD PGH++LMATML+GAAIMDGA+L+IAANE CP+P T EHL A++I+
Sbjct:   26 VNIGLVGHVDHGKTTLVAALSGVWTDRHSEELKRGISIKLGYADATFRKCPE--CEPPEAYTV-------EEICPIHGVET---EILRTVSFVDSPGHEMLMATMLSGAAIMDGAVLVIAANEKCPRPQTKEHLMALQII 153          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METMA (Translation initiation factor 2 subunit gamma OS=Methanosarcina mazei GN=eif2g PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 75/145 (51.72%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  253 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            Q  +NIG +GHV HGK+T+V+A+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQP T EHL A++I+
Sbjct:   26 QPCVNIGMVGHVDHGKTTLVRALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPEPQCYTV-------EKTCP-----NCGEKTEEHRTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEDCPQPQTKEHLMALDII 156          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_THEVO (Translation initiation factor 2 subunit gamma OS=Thermoplasma volcanium GN=eif2g PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 74/143 (51.75%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  253 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            Q T+NIG +GHV HGKST+  A++GV+T     E++R I+IKLGYA+  +YKC D             SG   NP       ENC ++  R +S VD PGH+ LMATML+G+A+M+GALL+IAANE CPQP T EHL A+EIM
Sbjct:    9 QPTVNIGMVGHVDHGKSTLTLALTGVKTDTHSEEIKRGISIKLGYADTPVYKCYD------------ASG---NPYYTRQPSENCELE--RVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQTREHLTALEIM 134          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METMP (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis GN=eif2g PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 71/145 (48.97%), Postives = 100/145 (68.97%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY     GK+    CD  G    +++ LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV---GKK----CDSCGG---KLQTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
The following BLAST results are available for this feature:
BLAST of FC930886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IF2G_DROME1.218e-6776.61Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_DICDI3.918e-6673.10Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_ENCCU6.932e-5570.95Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_AERPE5.165e-3450.00Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METTH1.151e-3351.37Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METAC1.963e-3350.00Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_ARCFU1.963e-3353.57Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METMA4.372e-3351.72Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_THEVO3.701e-3251.75Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_METMP4.834e-3248.97Translation initiation factor 2 subunit gamma OS=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110B02EF PostHarvP1 Citrus clementina cDNA clone C34110B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930886 ID=FC930886; Name=FC930886; organism=Citrus clementina; type=EST; length=683bp
CACACCCTCTCCAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCT
CGCAGTCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGG
GCTTGAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGCATTTTC
AAAGAAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAG
TAAGTTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTC
GCCAGGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAA
TCAACTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAA
TGAATTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGA
TATACAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCA
TATGGAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGA
GAACTGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGG
GTCATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGAT
GGAGCATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCCACAAC
ATCGGAGCACTTGGCAGCTGTTGAAATCATGCG
back to top