FC930886

Overview
NameFC930886
Unique NameFC930886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:50..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_SPIVO (Eukaryotic translation initiation factor 2 subunit gamma (Fragment) OS=Spironucleus vortens PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  277 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVE 675
            IGHVAHGKST+ K ++GV  ++F  E   NITIKLG+ANAKI++C+D  C  P  Y +  S   D P C  P  +    +LLRH+S +DCPGH   M TML+G A MDG LLLI+A + CPQ  T EH  A++
Sbjct:    1 IGHVAHGKSTLCKVLTGVDPIKFAAEKVNNITIKLGFANAKIFECKD--CAAPKNYFSQKSSSPDQPPC--PTCKGTHTQLLRHISIIDCPGHHDYMTTMLSGVAAMDGTLLLISAEQRCPQEQTREHFQAIQ 129          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METJA (Translation initiation factor 2 subunit gamma OS=Methanocaldococcus jannaschii GN=eif2g PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 73/147 (49.66%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            ++QA +NIG +GHV HGK+++ KA++GV T R   EL R I+I+LGYA+ +I KC       P C                P   NC    + LR VSFVD PGH+ LMATML+GA++MDGA+L+IAANE CPQP T EHL A+EI+
Sbjct:    7 AKQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC-------PQC----------GTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METM7 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV-------DKKCDACGG---KVSTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METM5 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY     GK+    CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV---GKK----CDSCGG---KLVTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_SULSO (Translation initiation factor 2 subunit gamma OS=Sulfolobus solfataricus GN=eif2g PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 71/147 (48.30%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  253 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS----GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            Q  +NIG +GHV HGK+T+V+AI+G+ T +   EL+R +TIKLGYA   I  CE   C +P  Y    S    G +D P            K LR +SF+D PGH++LMATML+GAA+MDGA+L++AANE  PQP T EH  A+ I+
Sbjct:    7 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES--CKKPEAYVTEPSCKSCGSDDEP------------KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 139          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_PYRAB (Translation initiation factor 2 subunit gamma OS=Pyrococcus abyssi GN=eif2g PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            SRQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C       P C +   S     P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CP+P T EHL A++I+
Sbjct:    7 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC-------PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METM6 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV-------DKKCDACGG---KVDTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_METVS (Translation initiation factor 2 subunit gamma OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 1
Query:  241 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            V S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD     + +++ LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CPQP T EHL A++ +
Sbjct:    2 VASNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCES--CNEPECYTV-------DKKCDCC---SGKVETLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQTKEHLMALDAL 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_PYRFU (Translation initiation factor 2 subunit gamma OS=Pyrococcus furiosus GN=eif2g PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            +RQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C +  C R             +P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CP+P T EHL A++I+
Sbjct:    7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSN--CGR----------YSTSPICPYCGHET---EFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII 136          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: IF2G_PYRHO (Translation initiation factor 2 subunit gamma OS=Pyrococcus horikoshii GN=eif2g PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 71/145 (48.97%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  247 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIM 681
            +RQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C       P C +   S     P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CP+P T EHL A++I+
Sbjct:    7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC-------PNCGRYSTS-----PVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII 136          
The following BLAST results are available for this feature:
BLAST of FC930886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
IF2G_SPIVO6.314e-3251.13Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_METJA8.246e-3249.66Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METM71.077e-3147.59Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METM51.077e-3148.97Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_SULSO1.407e-3148.30Translation initiation factor 2 subunit gamma OS=S... [more]
IF2G_PYRAB1.407e-3149.66Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_METM61.407e-3147.59Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METVS1.837e-3146.94Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_PYRFU2.399e-3148.28Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_PYRHO3.133e-3148.97Translation initiation factor 2 subunit gamma OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC34110B02EF PostHarvP1 Citrus clementina cDNA clone C34110B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930886 ID=FC930886; Name=FC930886; organism=Citrus clementina; type=EST; length=683bp
CACACCCTCTCCAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCT
CGCAGTCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGG
GCTTGAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGCATTTTC
AAAGAAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAG
TAAGTTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTC
GCCAGGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAA
TCAACTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAA
TGAATTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGA
TATACAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCA
TATGGAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGA
GAACTGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGG
GTCATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGAT
GGAGCATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCCACAAC
ATCGGAGCACTTGGCAGCTGTTGAAATCATGCG
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