FC930886

Overview
NameFC930886
Unique NameFC930886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13706 contig Ccv1_Contig13706:50..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +N+GTIGHV HGK+T+  AI+ + +             K G A AK Y  E D+ P     KA G       +     +E  +    RH + VDCPGH   +  M+ GAA MDGA+L+++A +  P P T EH+
Sbjct:   13 VNVGTIGHVDHGKTTLTAAITLILS-------------KAGLAQAKGYD-EIDKAPEE---KARGITINTTHV----EYETAK----RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHI 120          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 48/135 (35.56%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED-DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +N+GTIGHV HGKST+  AI+ V                     AK +K E+ D+ P           KE     ++   E    K  RH + VDCPGH   +  M+ GAA MDGA+L+++A +  P P T EH+
Sbjct:   13 VNVGTIGHVDHGKSTLTSAITCVLAAGLVEG-----------GKAKCFKYEEIDKAPEE---------KERGITINITHVEYETAK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-PMPQTREHV 124          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 48/135 (35.56%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED-DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +N+GTIGHV HGKST+  AI+ V                     AK +K E+ D+ P           KE     ++   E    K  RH + VDCPGH   +  M+ GAA MDGA+L+++A +  P P T EH+
Sbjct:   13 VNVGTIGHVDHGKSTLTSAITCVLAAGLVEG-----------GKAKCFKYEEIDKAPEE---------KERGITINITHVEYETAK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-PMPQTREHV 124          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU_TREHY (Elongation factor Tu OS=Treponema hyodysenteriae GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYAN-AKIYKCEDDRCPRPMCYKA--YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +N+GTIGHV HGK+T+  AI+ V +  F   ++     K+ Y + AK  + +  R P  +   A  +   + DN                RH + VDCPGH   +  M+ GAA MDGA+L+++A +    P T EH+
Sbjct:   13 VNVGTIGHVDHGKTTLTSAITAVSSAMFPATVQ-----KVAYDSVAKASESQGRRDPTKILTIATSHVEYESDN----------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAEDGV-MPQTKEHV 127          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU_BRAHW (Elongation factor Tu OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYAN-AKIYKCEDDRCPRPMCYKA--YGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +N+GTIGHV HGK+T+  AI+ V +  F   ++     K+ Y + AK  + +  R P  +   A  +   + DN                RH + VDCPGH   +  M+ GAA MDGA+L+++A +    P T EH+
Sbjct:   13 VNVGTIGHVDHGKTTLTSAITAVSSAMFPATVQ-----KVAYDSVAKASESQGRRDPTKILTIATSHVEYESDN----------------RHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAEDGV-MPQTKEHV 127          
BLAST of FC930886 vs. ExPASy Swiss-Prot
Match: EFTU_GRAFK (Elongation factor Tu OS=Gramella forsetii (strain KT0803) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 48/134 (35.82%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  262 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHL 663
            +NIGTIGHV HGK+T+  AI+ V                 GY+ A  +  + D  P           KE     +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+
Sbjct:   13 LNIGTIGHVDHGKTTLTAAITKVMA-------------DAGYSEASAFD-QIDNAPEE---------KERGITINSSHVEYSTEK--RHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG-PMPQTREHI 120          
The following BLAST results are available for this feature:
BLAST of FC930886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
EFTU1_THETN2.758e-1136.57Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU_AQUPY3.602e-1135.56Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_AQUAE3.602e-1135.56Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_TREHY4.704e-1133.58Elongation factor Tu OS=Treponema hyodysenteriae G... [more]
EFTU_BRAHW4.704e-1133.58Elongation factor Tu OS=Brachyspira hyodysenteriae... [more]
EFTU_GRAFK6.144e-1135.82Elongation factor Tu OS=Gramella forsetii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34110B02EF PostHarvP1 Citrus clementina cDNA clone C34110B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930886 ID=FC930886; Name=FC930886; organism=Citrus clementina; type=EST; length=683bp
CACACCCTCTCCAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCT
CGCAGTCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGG
GCTTGAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGCATTTTC
AAAGAAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAG
TAAGTTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTC
GCCAGGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAA
TCAACTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAA
TGAATTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGA
TATACAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCA
TATGGAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGA
GAACTGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGG
GTCATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGAT
GGAGCATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCCACAAC
ATCGGAGCACTTGGCAGCTGTTGAAATCATGCG
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