FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 9.275e-38
Identity = 73/118 (61.86%), Postives = 95/118 (80.51%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE+YKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D   + I WLDSN LAE +EF  K +ELE +CNPII+ +Y
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDSNTLAEKEEFVHKREELERVCNPIISGLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.275e-38
Identity = 71/118 (60.17%), Postives = 95/118 (80.51%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++NKITITNDKGRLSKD+I++MVQEAEKYKAEDE ++ +V AKN+LE+Y YNM+ TV+DEK+  K+   DK+K+ D   + I  LD NQ+AE +E+E K KELE +CNPI+ K+Y
Sbjct:  497 STGKENKITITNDKGRLSKDDIDRMVQEAEKYKAEDEANRDRVGAKNSLESYTYNMKQTVEDEKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLY 614          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.211e-37
Identity = 70/118 (59.32%), Postives = 99/118 (83.90%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+EIE+MV+EAEKYK EDE+  KK+EAKN+LENYAYN+RNTV+DEK+  K+   DKK IE+ + + ++++++N+  E +E+E+K KEL++  NPII+K+Y
Sbjct:  500 STGKSNKITITNDKGRLSKEEIERMVEEAEKYKTEDEKLDKKLEAKNSLENYAYNIRNTVRDEKLKEKIQEEDKKSIEEKVKEVLEFIETNEDLEKEEYEEKEKELKNFANPIISKLY 617          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.066e-37
Identity = 66/118 (55.93%), Postives = 98/118 (83.05%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++NKITITNDKGRLSK++IE+MVQ+A+KYKAED+  ++K+ AKN+LE+YA+NM+++V+D+ +  K+   DKKK+ D  DQ I WL++NQL + +E+E ++KELE +C PII K+Y
Sbjct:  496 STGKENKITITNDKGRLSKEDIERMVQDADKYKAEDDAQREKIAAKNSLESYAFNMKSSVEDDNMKGKISQEDKKKVVDRCDQTISWLENNQLGDKEEYEHQLKELEKVCQPIITKLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.066e-37
Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+EIE+MV +AEKYKAEDE  ++K+ AKNALE+YA+NM++ V DE +  K+  +DK KI D  ++ + WL+ NQLAE DEF+ K KELE +CNPII K+Y
Sbjct:  496 STGKVNKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.699e-37
Identity = 71/118 (60.17%), Postives = 95/118 (80.51%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+L++YA+NM+ TV+DEK+  K+   D + I D  ++ I WLD NQ AE +EFE + KELE +CNPII K+Y
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLDSYAFNMKATVEDEKLPGKILDEDHQNILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.524e-37
Identity = 66/118 (55.93%), Postives = 97/118 (82.20%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG +NKITITNDKGRLSK++IE+MVQEAEKYKAEDE+ + K+ AKN+LE+ A+N++++ +D+ +  K+   D+K++ +  D+ I WL++NQLA+ DEF+ K KELE +CNPII+K+Y
Sbjct:  496 STGNENKITITNDKGRLSKEDIERMVQEAEKYKAEDEQQRDKIAAKNSLESLAFNLKSSAQDDSLKDKISQEDRKRVVEKCDETIAWLENNQLADKDEFQHKQKELEKVCNPIISKLY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.524e-37
Identity = 70/118 (59.32%), Postives = 94/118 (79.66%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++NKITITNDKGRLSK++IE+MVQEAEKYK ED+  + KV +KN+LE+YA+NM++TV+DEK+  K+   DK KI +  ++ I WLD NQ AE +E+E   KELE +CNPII K+Y
Sbjct:  494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKCEDDVQRDKVSSKNSLESYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.603e-37
Identity = 67/118 (56.78%), Postives = 98/118 (83.05%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG++NKITIT DKGRLSK+EIE+MV +AEK+K EDE+ + +V AKN LE+YA++M++TV+DEK+  K+  +D+++I +  ++ ++WLD NQ AE +E+E + KELES+CNPIIAKMY
Sbjct:  496 STGKQNKITITRDKGRLSKEEIERMVNDAEKFKQEDEKQRDRVAAKNGLESYAFSMKSTVEDEKVKEKIGESDRRRIMEKCEETVKWLDGNQQAEKEEYEHRQKELESVCNPIIAKMY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_PARBA (Heat shock 70 kDa protein 2 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-2 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++ AKN LE+YAY++RNT+ D K+  KLD +DK+K++  ID+ + WLD NQ A  +EFE + KELES+ NPI+ K Y
Sbjct:  494 TGKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRISAKNGLESYAYSLRNTISDSKVDEKLDASDKEKLKTEIDKTVSWLDENQTATKEEFEAQQKELESVANPIMMKFY 610          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
HSP71_RAT9.275e-3861.86Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_CHICK9.275e-3860.17Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP70_PYRSA1.211e-3759.32Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP70_ONCTS2.066e-3755.93Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HS71L_HUMAN2.066e-3761.02Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP7C_CHICK2.699e-3760.17Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP71_ORYLA3.524e-3755.93Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP70_ONCMY3.524e-3759.32Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP70_ECHGR4.603e-3756.78Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP72_PARBA7.852e-3758.97Heat shock 70 kDa protein 2 OS=Paracoccidioides br... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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