FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE+YKAEDE  + +V AKNALE+YA+NM++ V+DE +  KL  ADKKK+ D   + I WLDSN LA+ +EF  K +ELE +C+PII+ +Y
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 72/118 (61.02%), Postives = 94/118 (79.66%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +TG+ NKITITNDKGRLSK+EIE+MVQEAE+YKAEDE  + +V AKNALE+YA+NM++ V+DE +  KL  ADKKK+ D   + I WLDSN LA+ +EF  K +ELE +C+PII+ +Y
Sbjct:  494 STGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLDKCQEVISWLDSNTLADKEEFVHKREELERVCSPIISGLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.749e-36
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++N+ITITNDKGRLSKDEIE+MV +A KY+A+D   + +VEAKN LENYAY+M+NT+ D  +  KLD +DK  +   ID  ++WL SNQ A  +E+E K KELES+CNPI+ KMY
Sbjct:  497 TGKRNQITITNDKGRLSKDEIERMVNDAMKYEADDRAQRDRVEAKNGLENYAYSMKNTLGDSNVSGKLDDSDKATLNKEIDVTLEWLSSNQEATKEEYEHKQKELESVCNPIMTKMY 613          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_NEUCR (Heat shock 70 kDa protein OS=Neurospora crassa GN=hsps-1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.284e-36
Identity = 69/117 (58.97%), Postives = 92/117 (78.63%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ N+ITITNDKGRLSK+EIE+M+ EAEK+K EDE   K+V AKN LE+YAY++RNT+ D K+  KLD ADK+K++  ID+ + WLD NQ A  +E+E++ KELE+I NPI+ K Y
Sbjct:  494 TGKTNQITITNDKGRLSKEEIERMLAEAEKFKEEDEAEAKRVAAKNGLESYAYSLRNTLSDSKVDEKLDAADKEKLKSEIDKIVAWLDENQQATREEYEERQKELEAIANPIMMKFY 610          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.984e-36
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 2
Query:    8 GQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            G+ NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++ AKN LE+YAY++RNT+ D K+  KLD +DK+K++  ID+ + WLD NQ A  +EFE + KELES+ NPI+ K Y
Sbjct:  493 GKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRISAKNGLESYAYSLRNTISDSKVDEKLDASDKEKLKTEIDKTVSWLDENQTATKEEFEAQQKELESVANPIMMKFY 608          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_LEIAM (Heat shock 70 kDa protein OS=Leishmania amazonensis GN=HSP70 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.089e-36
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++N+ITITNDKGRLSKDEIE+MV +A KY+A+D+    +VEAKN LENYAY+M+NT+ D  +  KLD  DK  +   I+ A++WL SNQ A  +E+E K KELE++CNPI+ KMY
Sbjct:  498 TGKRNQITITNDKGRLSKDEIERMVNDAMKYEADDKAQADRVEAKNGLENYAYSMKNTLGDSNVSGKLDDTDKSTLNKEIEAALEWLSSNQEATKEEYEHKQKELENVCNPIMTKMY 614          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.134e-35
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+ NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++ AKN LE+YAY+++NT+ D K+  KLD ADK+K++  ID+ + WLD NQ A  +E+E + KELE + NPI+ K Y
Sbjct:  494 TGKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAETARIGAKNGLESYAYSLKNTLSDSKVDEKLDAADKEKLKSEIDKVVAWLDDNQTATKEEYESQQKELEGVANPIMMKFY 610          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_ALTAL (Heat shock 70 kDa protein (Fragment) OS=Alternaria alternata GN=HSP70 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.134e-35
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 2
Query:   17 NKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++ AKNALE+YAY++RNT+ D K+  KLD  DK+K+   ID+ +QWLD NQ A  DE+E + KELE + NPI+ K Y
Sbjct:    3 NKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEAARISAKNALESYAYSLRNTLSDSKVDEKLDAGDKQKLTAEIDKTVQWLDDNQTATKDEYESQQKELEGVANPIMMKFY 115          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35
Identity = 68/117 (58.12%), Postives = 92/117 (78.63%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLSK+EI++MV EAEKYKAEDE    +++AKN LE+YAY++RN++ D  +  K+D +DK+ ++ A+ + I+WLDSN  A  DEFE K KELES+ NPI+AK+Y
Sbjct:  493 TGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIY 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.481e-35
Identity = 66/118 (55.93%), Postives = 95/118 (80.51%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            ++G++NKITITNDKGRLSK+EIE+MVQEAE+YKA+DE  ++KV AKN LE+ A+NM++TV+ + +  K+   D+KKI D  +Q I W+++NQ+AE +E+E + KELE +CN II K+Y
Sbjct:  496 SSGKQNKITITNDKGRLSKEEIERMVQEAERYKADDEAQREKVSAKNTLESIAFNMKSTVEGDNLKDKISEDDRKKIVDKCNQTISWMENNQMAEKEEYEHQQKELEKVCNSIITKLY 613          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
HS71B_MOUSE7.852e-3761.02Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE7.852e-3761.02Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP70_LEIDO1.749e-3658.97Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HSP70_NEUCR2.284e-3658.97Heat shock 70 kDa protein OS=Neurospora crassa GN=... [more]
HSP71_PARBA2.984e-3658.62Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP70_LEIAM5.089e-3658.12Heat shock 70 kDa protein OS=Leishmania amazonensi... [more]
HSP70_TRIRU1.134e-3557.26Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HSP70_ALTAL1.134e-3560.18Heat shock 70 kDa protein (Fragment) OS=Alternaria... [more]
HSP72_SCHPO1.481e-3558.12Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP70_PLEWA1.481e-3555.93Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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