FC930890

Overview
NameFC930890
Unique NameFC930890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig752 contig Ccv1_Contig752:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP3_TOBAC (Luminal-binding protein 3 (Fragment) OS=Nicotiana tabacum GN=BIP3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.763e-34
Identity = 62/118 (52.54%), Postives = 96/118 (81.36%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLS++EIE+MV+EAE++  ED++ K++++A+N LE Y YNM+N + D +K+  KL+  +K+KIE A+ +A++WLD NQ AE +++E+K+KE+E++CNPII  +Y
Sbjct:   30 TGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVY 147          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.221e-34
Identity = 62/118 (52.54%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    2 TTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            +T ++NKITITNDKGRLSK++IE+MV EAEKY+ EDE+ K+ + AKN LE+Y +NM+ T+ ++ + +K+  +D+  I D  ++ I+WLD+NQLA+ +E+E + KELE +CNPII K+Y
Sbjct:  494 STNKENKITITNDKGRLSKEDIERMVNEAEKYRNEDEKQKETIAAKNGLESYCFNMKATLDEDNLKTKISDSDRTTILDKCNETIKWLDANQLADKEEYEHRQKELEGVCNPIITKLY 611          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.221e-34
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLSK+EIEKMV EAEK+K EDE+   +V+AKN LE+YAY+++NT+ +E+  SKLD ++ +++  A D+ I WLDSNQ A  +EF D+ KELES  NPI+ K Y
Sbjct:  493 TGKTQKITITNDKGRLSKEEIEKMVSEAEKFKEEDEKEASRVQAKNQLESYAYSLKNTLGEEQFKSKLDASEIEEVTKAADETIAWLDSNQTATQEEFADQQKELESKANPIMTKAY 609          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.221e-34
Identity = 63/118 (53.39%), Postives = 96/118 (81.36%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLS++EIE+MV+EAE++  ED++ K+K++A+NALE Y YNM+N + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++++K+KE+E++CNPII  +Y
Sbjct:  527 TGKAEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKEKIDARNALETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYDEKLKEVEAVCNPIITAVY 644          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.221e-34
Identity = 60/118 (50.85%), Postives = 99/118 (83.90%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITN+KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E+K+KE+E++CNPI++ +Y
Sbjct:  524 TGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVY 641          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.221e-34
Identity = 60/118 (50.85%), Postives = 99/118 (83.90%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITN+KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+ +A++WLD NQ AE +++E+K+KE+E++CNPI++ +Y
Sbjct:  524 TGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEALKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIVSAVY 641          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_TRYCR (Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.125e-34
Identity = 60/117 (51.28%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++N+I +TNDKGRLS+ EIE+MV+EA KY+AED++  ++++AKN LENYA++M+N V D  +  K++ ADKK I  A+++A++WL++NQ A  +E+E + KELE++C PI+  MY
Sbjct:  498 TGKRNQIVLTNDKGRLSRAEIERMVREAAKYEAEDKDQVRQIDAKNGLENYAFSMKNAVNDPNVAGKIEEADKKTITSAVEEALEWLNNNQEASKEEYEHRQKELENLCTPIMTNMY 614          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.125e-34
Identity = 63/118 (53.39%), Postives = 96/118 (81.36%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG+  KITITNDKGRLS++EIE+MV+EAE++  ED++ K++++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A  +A++WLD NQ AE +++E+K+KE+E+ICNPII  +Y
Sbjct:  151 TGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALEWLDDNQSAEKEDYEEKLKEVEAICNPIITAVY 268          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.061e-33
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            TG++N+I ITNDKGRLSK +IE+MV +A KY+AED+ H   ++AKN LENYA++M+NT+ D  +  KLD ADK  +  A+++A++WL+ NQ A  +E+  + KELE +C PI++KMY
Sbjct:  498 TGKRNQIVITNDKGRLSKADIERMVSDAAKYEAEDKAHVXXIDAKNGLENYAFSMKNTINDPNVAGKLDDADKNAVTTAVEEALRWLNDNQEASLEEYNHRQKELEGVCAPILSKMY 614          
BLAST of FC930890 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.061e-33
Identity = 63/117 (53.85%), Postives = 88/117 (75.21%), Query Frame = 2
Query:    5 TGQKNKITITNDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMY 355
            T + NKI ITNDKGRLSK+EIE+M+ EAEKYKAEDE    ++  KN LE+YAY++RN+++  K+  KL+  DK+K++  ID+ +QWLD NQ A  +E+E + KELE++ NPI+ K Y
Sbjct:  494 TRKTNKIVITNDKGRLSKEEIERMLAEAEKYKAEDEAEASRIRPKNGLESYAYSLRNSLRHSKVDEKLEAGDKEKLKSEIDKTVQWLDENQTATKEEYESQQKELEAVANPIMMKFY 610          
The following BLAST results are available for this feature:
BLAST of FC930890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
BIP3_TOBAC4.763e-3452.54Luminal-binding protein 3 (Fragment) OS=Nicotiana ... [more]
HSP7D_DROME6.221e-3452.54Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP72_CANAL6.221e-3458.12Heat shock protein SSA2 OS=Candida albicans GN=SSA... [more]
BIP_SOLLC6.221e-3453.39Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP3_MAIZE6.221e-3450.85Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE6.221e-3450.85Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP70_TRYCR8.125e-3451.28Heat shock 70 kDa protein OS=Trypanosoma cruzi GN=... [more]
BIP1_TOBAC8.125e-3453.39Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
HSP74_TRYBB1.061e-3352.14Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HSP70_AJECA1.061e-3353.85Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]

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Properties
Property NameValue
Genbank descriptionC34110B06EF PostHarvP1 Citrus clementina cDNA clone C34110B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930890 ID=FC930890; Name=FC930890; organism=Citrus clementina; type=EST; length=398bp
GACAACGGGCCAAAAGAACAAGATCACAATCACCAACGATAAGGGTAGAT
TGTCAAAGGATGAAATTGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAG
GCTGAAGACGAGGAGCACAAGAAGAAGGTCGAGGCCAAGAATGCCTTGGA
AAACTATGCCTACAATATGAGGAACACTGTCAAGGACGAGAAGATCGGCT
CCAAACTTGATCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGATCAG
GCAATTCAATGGCTTGATAGCAACCAGCTGGCTGAGGCCGATGAATTTGA
AGACAAGATGAAGGAGCTTGAGAGCATCTGCAATCCCATCATTGCCAAGA
TGTATNCAGGTGCTGGTGGTGATATGGGCGGTGGCATGGATGATGATG
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