FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_YERPA (Adenine phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=apt PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  122 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+  +   +    +I
Sbjct:   45 YSASIKLLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFI 159          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_YERP3 (Adenine phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=apt PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 2
Query:  122 FSVSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            +S S+    + +SE    V  + G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  ++Q G++ L+VDDL+A GGT+ A ++L+  +   +    +I
Sbjct:   45 YSASIELLSEHYSESG--VTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFI 159          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_LEPBL (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=apt PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIF 457
            GI+ARGF+ G P+A+ +G  F+P+RK  KLP E +SEEY LEYGK V+E+H  AVQ G++ L++DDL+A GGT+ AA++LL  +   I+
Sbjct:   55 GIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIY 143          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_LEPBJ (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=apt PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIF 457
            GI+ARGF+ G P+A+ +G  F+P+RK  KLP E +SEEY LEYGK V+E+H  AVQ G++ L++DDL+A GGT+ AA++LL  +   I+
Sbjct:   55 GIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVSEEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIY 143          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_KLEP3 (Adenine phosphoribosyltransferase OS=Klebsiella pneumoniae (strain 342) GN=apt PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALALGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIDATVKLIRRLGGEVHDAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_KLEP7 (Adenine phosphoribosyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=apt PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALALGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIDATVKLIRRLGGEVHDAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ENTS8 (Adenine phosphoribosyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=apt PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALALGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SOLUE (Adenine phosphoribosyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=apt PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            GI+ARGFIF P +A+A+GA FVP+RKPKKLP E +   Y LEYG   +EMH  A+  G R LIVDDL+A GGT SAA R++
Sbjct:   55 GIEARGFIFAPALAYALGAGFVPVRKPKKLPAECVRITYDLEYGTDTLEMHKDAIGNGHRVLIVDDLLATGGTASAAARMV 135          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PHOPR (Adenine phosphoribosyltransferase OS=Photobacterium profundum GN=apt PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSA----AIRLLGSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E+ISE Y LEYGK ++E+HV A+  G++ L+VDDL+A GGT+ A    A RL G +++  F++
Sbjct:   53 GTEARGFLFGAPLALELGVGFVPVRKPGKLPREVISESYELEYGKDILEIHVDAIVEGDKVLLVDDLLATGGTIEATTKLARRLGGVVEDAAFVI 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_LEPIN (Adenine phosphoribosyltransferase OS=Leptospira interrogans GN=apt PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 45/89 (50.56%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIF 457
            GI+ARGF+ G P+A+ +G  F+P+RK  KLP E +SEEY LEYGK V+E+H  ++Q G++ L++DDL+A GGT+ AA++LL  +   I+
Sbjct:   55 GIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVSEEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIY 143          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_YERPA5.782e-2142.74Adenine phosphoribosyltransferase OS=Yersinia pest... [more]
APT_YERP35.782e-2142.74Adenine phosphoribosyltransferase OS=Yersinia pseu... [more]
APT_LEPBL5.782e-2152.81Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_LEPBJ5.782e-2152.81Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_KLEP39.862e-2149.47Adenine phosphoribosyltransferase OS=Klebsiella pn... [more]
APT_KLEP71.288e-2049.47Adenine phosphoribosyltransferase OS=Klebsiella pn... [more]
APT_ENTS81.288e-2049.47Adenine phosphoribosyltransferase OS=Enterobacter ... [more]
APT_SOLUE1.682e-2060.49Adenine phosphoribosyltransferase OS=Solibacter us... [more]
APT_PHOPR1.682e-2051.58Adenine phosphoribosyltransferase OS=Photobacteriu... [more]
APT_LEPIN1.682e-2050.56Adenine phosphoribosyltransferase OS=Leptospira in... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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