FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHIFL (Adenine phosphoribosyltransferase OS=Shigella flexneri GN=apt PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHIF8 (Adenine phosphoribosyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=apt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHEPW (Adenine phosphoribosyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=apt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILI 466
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  V+E+HV A+   ++ L+VDDL+A GGT+ A ++L   LG   NH   +I
Sbjct:   62 GTEARGFLFGAPLALELGIGFVPVRKPGKLPRETISESYELEYGHDVLEIHVDAITKEDKVLVVDDLLATGGTIEATVKLIRNLGGQVNHAAFVI 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHEAM (Adenine phosphoribosyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=apt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 43/81 (53.09%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            G ++RGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++AG++ L++DDL+A GGT+ A ++L+
Sbjct:   60 GTESRGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDTLEIHVDAIKAGDKVLVIDDLLATGGTIEATVKLI 140          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PECCP (Adenine phosphoribosyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=apt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A A+G  FVP+RKP KLP   ISE Y LEYG   +E+H  A+ AG+  L++DDL+A GGTL A ++L+    G++ +  FI+
Sbjct:   64 GTEARGFLFGAPVALALGVGFVPVRKPGKLPRPTISESYELEYGSDTLEIHSDAISAGDNVLVIDDLLATGGTLEATVKLIRRLGGTVNDAAFII 158          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_CLOTH (Adenine phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=apt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIY 469
            G ++RGFIFG P+A+A+G  FVP+RK  KLP + IS EY LEYG  ++EMH+ A++ G+R +IVDDL+A GGT  + I+L+  +   I  ++Y
Sbjct:   55 GAESRGFIFGAPLAYALGKGFVPIRKKGKLPYKTISVEYELEYGTDILEMHIDAIKKGQRVVIVDDLLATGGTTKSNIKLVEQLGGEILGIVY 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_THEEB (Adenine phosphoribosyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  176 VRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            + ++ GI++RGFIFG P+A+ +GA F+P+RKP KL   + + EY LEYG+  +EMH  A++ G R LIVDDL+A GGT +AA  L+   Q  ++   +I
Sbjct:   49 IDYVAGIESRGFIFGAPLAYRLGAGFIPLRKPGKLCAPVYAVEYELEYGRDRLEMHQDAIEPGRRVLIVDDLIATGGTAAAAAGLIQKAQAELYGFAFI 147          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHISS (Adenine phosphoribosyltransferase OS=Shigella sonnei (strain Ss046) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHIDS (Adenine phosphoribosyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHIBS (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SHIFL4.895e-2049.47Adenine phosphoribosyltransferase OS=Shigella flex... [more]
APT_SHIF84.895e-2049.47Adenine phosphoribosyltransferase OS=Shigella flex... [more]
APT_SHEPW4.895e-2051.58Adenine phosphoribosyltransferase OS=Shewanella pi... [more]
APT_SHEAM4.895e-2053.09Adenine phosphoribosyltransferase OS=Shewanella am... [more]
APT_PECCP4.895e-2049.47Adenine phosphoribosyltransferase OS=Pectobacteriu... [more]
APT_CLOTH4.895e-2049.46Adenine phosphoribosyltransferase OS=Clostridium t... [more]
APT_THEEB6.392e-2046.46Adenine phosphoribosyltransferase OS=Thermosynecho... [more]
APT_SHISS6.392e-2049.47Adenine phosphoribosyltransferase OS=Shigella sonn... [more]
APT_SHIDS6.392e-2049.47Adenine phosphoribosyltransferase OS=Shigella dyse... [more]
APT_SHIBS6.392e-2049.47Adenine phosphoribosyltransferase OS=Shigella boyd... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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