FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHIB3 (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHELP (Adenine phosphoribosyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=apt PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  ++E+H  A++ G++ L+VDDL+A GGT+ A ++L+    G +++  F++
Sbjct:   60 GTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDMLEIHTDAIKPGDKVLVVDDLLATGGTIEATVKLIRQLGGEVEHAAFVI 154
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SALHS (Adenine phosphoribosyltransferase OS=Salmonella heidelberg (strain SL476) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y+LEYG   +E+HV A++ G+  L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYALEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ESCF3 (Adenine phosphoribosyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ENT38 (Adenine phosphoribosyltransferase OS=Enterobacter sp. (strain 638) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALEMGVGFVPVRKPRKLPRETIAESYELEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECOUT (Adenine phosphoribosyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=apt PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECOSM (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECOSE (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SE11) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECOLU (Adenine phosphoribosyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECOLI (Adenine phosphoribosyltransferase OS=Escherichia coli (strain K12) GN=apt PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_SHIB36.392e-2049.47Adenine phosphoribosyltransferase OS=Shigella boyd... [more]
APT_SHELP6.392e-2047.37Adenine phosphoribosyltransferase OS=Shewanella lo... [more]
APT_SALHS6.392e-2048.42Adenine phosphoribosyltransferase OS=Salmonella he... [more]
APT_ESCF36.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia f... [more]
APT_ENT386.392e-2048.42Adenine phosphoribosyltransferase OS=Enterobacter ... [more]
APT_ECOUT6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOSM6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOSE6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOLU6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECOLI6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
back to top