FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO5E (Adenine phosphoribosyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO57 (Adenine phosphoribosyltransferase OS=Escherichia coli O157:H7 GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO55 (Adenine phosphoribosyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO45 (Adenine phosphoribosyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO27 (Adenine phosphoribosyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ECO24 (Adenine phosphoribosyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG   +E+HV A++ G++ L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ACIBL (Adenine phosphoribosyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=apt PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  173 SVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            ++  + G++ARGFIFGP +A+ + A F+P+RKP+KLPGE +   Y LEYG+  +E+H  A+Q  +R L+VDDL+A GGT  AA  L+  +   I  + ++
Sbjct:   58 NIDLVVGMEARGFIFGPAVAYRLNAGFIPIRKPRKLPGETVKHTYKLEYGEDTLEIHKDAIQKAQRVLVVDDLLATGGTAVAATELVKQLGGEICGIAFV 157
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SALTY (Adenine phosphoribosyltransferase OS=Salmonella typhimurium GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G+  L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SALTI (Adenine phosphoribosyltransferase OS=Salmonella typhi GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G+  L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFII 156
[Close]
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SALSV (Adenine phosphoribosyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP+KLP E I+E Y LEYG   +E+HV A++ G+  L+VDDL+A GGT+ A ++L+    G + +  FI+
Sbjct:   62 GTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFII 156
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_ECO5E6.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECO576.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECO556.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECO456.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECO276.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ECO246.392e-2049.47Adenine phosphoribosyltransferase OS=Escherichia c... [more]
APT_ACIBL6.392e-2044.00Adenine phosphoribosyltransferase OS=Acidobacteria... [more]
APT_SALTY8.349e-2048.42Adenine phosphoribosyltransferase OS=Salmonella ty... [more]
APT_SALTI8.349e-2048.42Adenine phosphoribosyltransferase OS=Salmonella ty... [more]
APT_SALSV8.349e-2048.42Adenine phosphoribosyltransferase OS=Salmonella sc... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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