FC930892

Overview
NameFC930892
Unique NameFC930892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_HAES2 (Adenine phosphoribosyltransferase OS=Haemophilus somnus (strain 2336) GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHI 454
            G ++RGFIFG P+A A+   F+ +RKP KLP E I++ Y LEYG+  +EMHV ++QAG+  L++DDL+A GGT+ A ++L+  +Q  +
Sbjct:   58 GTESRGFIFGAPVALALNVPFILVRKPGKLPRETIAQSYQLEYGQDTLEMHVSSIQAGDNVLVIDDLLATGGTIEATVKLVERLQGQV 145          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_HAES1 (Adenine phosphoribosyltransferase OS=Haemophilus somnus (strain 129Pt) GN=apt PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 42/88 (47.73%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHI 454
            G ++RGFIFG P+A A+   F+ +RKP KLP E I++ Y LEYG+  +EMHV ++QAG+  L++DDL+A GGT+ A ++L+  +Q  +
Sbjct:   58 GTESRGFIFGAPVALALNVPFILVRKPGKLPRETIAQSYQLEYGQDTLEMHVSSIQAGDNVLVIDDLLATGGTIEATVKLVERLQGQV 145          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_CLOD6 (Adenine phosphoribosyltransferase OS=Clostridium difficile (strain 630) GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIF---ILIYIQMLN 484
            G +ARGF+ G P+A+A+G  FVP+RKP KLPGE+ S EY LEYG   +E+H  A++ G++  IVDDL+A GGT+ AA +L+  +   +     LI ++ LN
Sbjct:   54 GPEARGFLMGTPVAYALGVGFVPIRKPGKLPGEVESYEYGLEYGTDTLEIHKDAIKKGQKVAIVDDLLATGGTMEAAAKLVEKLGGEVVSMQFLIELKFLN 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ACAM1 (Adenine phosphoribosyltransferase OS=Acaryochloris marina (strain MBIC 11017) GN=apt PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  173 SVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSM 442
            S+ ++ GI++RGFIFG P+A+ +GA FVP+RKP KLP  I ++EY LEYG   +E+H  A  AG R L+VDDL+A GGT +A  +LL  +
Sbjct:   48 SIDYVVGIESRGFIFGAPLAYQLGAGFVPVRKPGKLPAAIHAQEYELEYGTDRLEIHQDACPAGSRVLVVDDLLATGGTAAATAQLLAPL 137          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ALKMQ (Adenine phosphoribosyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=apt PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRL---LGSMQNHIFILIYIQMLN 484
            G +ARGF+ G P+A+ IGA FVP+RKP KLPGE IS EY LEYG   +E+H  A+Q G+R  I+DDL+A GGT+ A  +L   LG     I  LI +  LN
Sbjct:   54 GPEARGFLVGAPVAYKIGAGFVPIRKPGKLPGETISYEYELEYGTDSLEIHTDAIQPGQRVAILDDLLATGGTVVATAKLIEELGGEVVSINFLIELGFLN 154          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SODGM (Adenine phosphoribosyltransferase OS=Sodalis glossinidius (strain morsitans) GN=apt PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFILIYIQMLNACFSSYILLFSYS 523
            G +ARGF+FG P+A A+G  FVP+RKP KLP E ISE Y LEYG   +E+H  A+  G++ L+VDDL+A GGT+ A ++L+    G +Q+  F++    +      + I + SYS
Sbjct:   62 GTEARGFLFGTPVALALGLGFVPVRKPGKLPRETISENYVLEYGTDGLEIHKDAIVPGDKVLVVDDLLATGGTICATVKLIRRLGGEVQDAAFVINLAYLGGETLLNSIGVASYS 176          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SILST (Adenine phosphoribosyltransferase OS=Silicibacter sp. (strain TM1040) GN=apt PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLLGSMQNHIFILIYI 472
            G++ARGFI G  IA  +G  FVP+RK  KLPG  IS+EY LEYG+ V+E+H  A+Q GE+ L+VDDL+A GGT  A I+L+  +   I    +I
Sbjct:   58 GLEARGFILGGAIAHQLGTGFVPVRKKGKLPGATISQEYKLEYGEAVVELHKDAIQPGEKILVVDDLLATGGTAGAGIKLIEKLGGEIISCSFI 151          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_PSEHT (Adenine phosphoribosyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=apt PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 41/81 (50.62%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL 433
            G ++RGFIFG P+++A+G  F+P+RKP KLP E++ ++Y LEYG+  +E+HV A+  G++ L+VDDL+A GGT+ A I+L+
Sbjct:   60 GTESRGFIFGAPLSYALGIPFIPVRKPGKLPREVVRQDYLLEYGEDTLELHVDAIVPGDKVLLVDDLLATGGTIEATIKLV 140          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_ACTSZ (Adenine phosphoribosyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=apt PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 48/116 (41.38%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  128 VSLSFRHKLFSEPSPSVRFLQGIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            ++ +FRHK        +  + G ++RGFIFG P+A A+G  F+ +RKP KLP E+IS+ Y LEYG+  +E+H  A+Q G+  L++DDL+A GGT+ A I+L+    G +++  F++
Sbjct:   45 IAEAFRHK-------GITKIIGTESRGFIFGAPVAVALGLPFILVRKPGKLPREVISQSYQLEYGEDKLEIHADAIQKGDNVLVIDDLLATGGTVEACIKLVNRLGGDVKHAAFVI 153          
BLAST of FC930892 vs. ExPASy Swiss-Prot
Match: APT_SHEWM (Adenine phosphoribosyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=apt PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  191 GIKARGFIFGPPIAWAIGA*FVPMRKPKKLPGEIISEEYSLEYGKYVMEMHVCAVQAGERALIVDDLVAIGGTLSAAIRLL----GSMQNHIFIL 463
            G +ARGF+FG P+A  +G  FVP+RKP KLP E ISE Y LEYG  V+E+H  A+   ++ L+VDDL+A GGT+ A ++L+    G +++  F++
Sbjct:   60 GTEARGFLFGAPLALELGVGFVPVRKPGKLPRETISESYELEYGHDVLELHTDAINENDKVLVVDDLLATGGTIEATVKLIRKLGGEVKHAAFVI 154          
The following BLAST results are available for this feature:
BLAST of FC930892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT_HAES28.349e-2047.73Adenine phosphoribosyltransferase OS=Haemophilus s... [more]
APT_HAES18.349e-2047.73Adenine phosphoribosyltransferase OS=Haemophilus s... [more]
APT_CLOD68.349e-2047.52Adenine phosphoribosyltransferase OS=Clostridium d... [more]
APT_ACAM18.349e-2052.22Adenine phosphoribosyltransferase OS=Acaryochloris... [more]
APT_ALKMQ1.090e-1952.48Adenine phosphoribosyltransferase OS=Alkaliphilus ... [more]
APT_SODGM1.424e-1944.35Adenine phosphoribosyltransferase OS=Sodalis gloss... [more]
APT_SILST1.424e-1951.06Adenine phosphoribosyltransferase OS=Silicibacter ... [more]
APT_PSEHT1.424e-1950.62Adenine phosphoribosyltransferase OS=Pseudoalterom... [more]
APT_ACTSZ1.424e-1941.38Adenine phosphoribosyltransferase OS=Actinobacillu... [more]
APT_SHEWM1.860e-1947.37Adenine phosphoribosyltransferase OS=Shewanella wo... [more]

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Properties
Property NameValue
Genbank descriptionC34110B08EF PostHarvP1 Citrus clementina cDNA clone C34110B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930892 ID=FC930892; Name=FC930892; organism=Citrus clementina; type=EST; length=740bp
GACCAAACATTTTTCCTCACTCTCTCATAATAGAAACCCTAGAATAAAAA
TCGATCAGAAAAGCCACCATTCTGCCACCGTCCAAACCATCATTCTCAAT
TGGACACCCATTTCGCATCGTTTTTCAGTCTCTTTGTCCTTTCGCCACAA
GTTGTTCAGCGAACCCTCACCTTCGGTTCGATTCTTGCAAGGTATTAAAG
CTAGGGGTTTTATATTTGGGCCTCCTATTGCATGGGCTATTGGGGCATAG
TTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGGGGAGATTATTTCCGA
AGAGTATTCCTTGGAATATGGAAAATATGTAATGGAGATGCATGTATGTG
CTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAATT
GGTGGGACCTTGTCTGCTGCAATCAGGCTACTTGGTAGTATGCAAAACCA
TATATTTATATTGATATACATACAAATGCTGAATGCTTGCTTTTCTTCAT
ACATTCTTCTTTTTTCATACAGCTGCTGTTTTTGCTGTCGAAATGTGCAA
AGATAGCTGCTGTTGTTCTGTTCAAAAGTGCAGAAACAACAGTTGTTTCT
GCTGTTTTGAACAGGAAAAACAGTAGCTGTGTCTGAAATGCACTGATGAT
TCGTGTCTGAATTAATTTTGTTCCCATGAATCTTGCAGTCGCTTTGTAGT
TTTAATTTCATTAAGCGCTGTCAGAGATGTATTGTACTGG
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