FC930894

Overview
NameFC930894
Unique NameFC930894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:54..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.124e-43
Identity = 95/174 (54.60%), Postives = 113/174 (64.94%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M+L DWF  VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.467e-43
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            MFL DWF+ VL+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI    SEE+ R  LGL+  TTGKGK  L  + VRP+EVFMCS
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIG-NTSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCS 170          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.917e-43
Identity = 94/174 (54.02%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++ DWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.503e-43
Identity = 95/174 (54.60%), Postives = 114/174 (65.52%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   E F ESK              VPFL+LGNKID P A SE+++R+ LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 93/174 (53.45%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M++ DWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.270e-43
Identity = 95/177 (53.67%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  130 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 95/177 (53.67%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  130 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 95/177 (53.67%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  130 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.576e-43
Identity = 95/177 (53.67%), Postives = 108/177 (61.02%), Query Frame = 1
Query:  130 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCS 179          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.283e-43
Identity = 96/174 (55.17%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            M+L DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVS 172          
The following BLAST results are available for this feature:
BLAST of FC930894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_PICST1.124e-4354.60Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
SAR1A_DICDI1.467e-4355.75GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_LODEL1.917e-4354.02Small COPII coat GTPase SAR1 OS=Lodderomyces elong... [more]
SAR1_ASPNG2.503e-4354.60Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_CANAL4.270e-4353.45Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1B_MOUSE4.270e-4353.67GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_RAT5.576e-4353.67GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG5.576e-4353.67GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_BOVIN5.576e-4353.67GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1_DEBHA7.283e-4355.17Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110B10EF PostHarvP1 Citrus clementina cDNA clone C34110B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930894 ID=FC930894; Name=FC930894; organism=Citrus clementina; type=EST; length=649bp
TCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTG
ATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCG
TTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTAC
GGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTT
TTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAG
ATGAGAGATTGGTCCAACATCAGCCAACACAGTATCCCACATCGGAAGAG
CTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCA
GATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGG
TATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAA
GAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCT
CGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGT
TGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTT
AATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCA
back to top