FC930894

Overview
NameFC930894
Unique NameFC930894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:54..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.983e-40
Identity = 92/172 (53.49%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  133 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  K+       RP+E+FMCS
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKI----EGQRPIELFMCS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.590e-40
Identity = 91/172 (52.91%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  133 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            +  WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+EVFMCS
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 91/167 (54.49%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  148 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            + VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKGKV L    +RP+EVFMCS
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 167          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 89/172 (51.74%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  133 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARI----EGQRPVELFMCS 172          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.286e-39
Identity = 90/177 (50.85%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  130 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L + N RP+EVFMCS
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCS 179          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.885e-39
Identity = 89/169 (52.66%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  142 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID   A SE ELR  LGL N TTG  ++       RP+EVFMCS
Sbjct:    8 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRI----EGQRPVEVFMCS 171          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.832e-33
Identity = 75/170 (44.12%), Postives = 98/170 (57.65%), Query Frame = 1
Query:  139 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL  S+ RPLEVF CS
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLR-SDQRPLEVFPCS 173          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.746e-20
Identity = 63/175 (36.00%), Postives = 82/175 (46.86%), Query Frame = 1
Query:  127 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCS 648
            MFL+DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK               P L+LG+K D     + E L   L +  F  G     L +SN  P ++ M S
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRFELG-----LNNSNNVPFDLIMTS 170          
BLAST of FC930894 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  172 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 525
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT +P++  + IG +K +  DLGGH  AR  W                   ERF E ++              P +VL NKID+
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVRE--AYETVLSLEKRAPVVVLMNKIDL 146          
The following BLAST results are available for this feature:
BLAST of FC930894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_KLULA1.983e-4053.49Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_YEAST2.590e-4052.91Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_PHANO7.537e-4054.49Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_ASHGO9.843e-4051.74Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1A_MOUSE1.286e-3950.85GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_CANGA4.885e-3952.66Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA6.832e-3344.12GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI1.746e-2036.00GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU6.013e-1335.59Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionC34110B10EF PostHarvP1 Citrus clementina cDNA clone C34110B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930894 ID=FC930894; Name=FC930894; organism=Citrus clementina; type=EST; length=649bp
TCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTG
ATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCG
TTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTAC
GGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTT
TTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAG
ATGAGAGATTGGTCCAACATCAGCCAACACAGTATCCCACATCGGAAGAG
CTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCA
GATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGG
TATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAA
GAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCT
CGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAGAGT
TGCGTTACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTT
AATCTAGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGTGTAGCA
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