FC930898

Overview
NameFC930898
Unique NameFC930898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:24..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.720e-39
Identity = 77/183 (42.08%), Postives = 116/183 (63.39%), Query Frame = 2
Query:  122 SMGTTIIGVTYNGGFVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            S GTTI+ VT+NGG ++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE       A++LA+ RD  SGGV   V +
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVI 196          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.146e-38
Identity = 77/183 (42.08%), Postives = 116/183 (63.39%), Query Frame = 2
Query:  122 SMGTTIIGVTYNGGFVLGADSRTSTG-VYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            S GTTI+ VT+NGG ++G+DSR S G  YV+++  +K+ Q+ D ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  LQ G I  GWD+ +G ++Y V LGG ++ QPF I      Y+YG+ D  +K  M+KEE       A++LA+ RD  SGGV   V +
Sbjct:   14 STGTTILAVTFNGGVIIGSDSRASIGGSYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVI 196          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB6_ENCCU (Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi GN=PRE3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.451e-35
Identity = 76/182 (41.76%), Postives = 115/182 (63.19%), Query Frame = 2
Query:  110 NAPHSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVR 655
            N     GTTII + Y+ G ++GADSRTS G YV++R +DK+TQ+TD +++CRSGS+AD+Q +S Y+R +L  ++        V+ AA L   + Y N + L  G+IV G+D  +  +++ + LGG++ E+ +AI      ++YG+ D  W+ GM+ EE    V  AVS AI RD ASGG +R
Sbjct:    4 NEKEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSADTQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENPSLL-AGLIVAGYD--DKPRVFNISLGGSLTERDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDNASGGCIR 182          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 2
Query:   83 KMDLKMEDFNAPHSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTLI 670
            K  L+M+ F      GTTI+GV Y GG VLGAD+R + G  VA++  +KI  + DN+Y C +G+AAD+++ +  +   L  H +  G+   V  A  +++ + +  +  +   +I+GG D   G  ++ +   G+  + P+             F+  +K  MTKEEA ALV +A+S  I  D  SG  V  VT+I
Sbjct:   22 KTGLRMKGFM---KTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGID-INGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNV-DVTVI 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 61/196 (31.12%), Postives = 101/196 (51.53%), Query Frame = 2
Query:   71 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            C R  M L  +   AP  +  GTTI+G+ +  G +LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E   LV +A+   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 60/196 (30.61%), Postives = 101/196 (51.53%), Query Frame = 2
Query:   71 CFRGKMDLKMEDFNAPHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            C R  M L  +   AP  +  GTTI+G+ +  G +LGAD+R + G  VA++  +KI  +  N+Y C +G+AAD++ V+D V   L  H  Q G+ + V  A  L++   ++ +  +   +++GG D   G  ++ +   G+    PFA            F+  +KEG+T++E   LV +++   I  D  SG  V
Sbjct:   19 CKRNDM-LTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVD-ITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 53/187 (28.34%), Postives = 95/187 (50.80%), Query Frame = 2
Query:   89 DLKMEDFNAPHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            D   + F  P +   GTTI GV Y  G VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 53/187 (28.34%), Postives = 95/187 (50.80%), Query Frame = 2
Query:   89 DLKMEDFNAPHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            D   + F  P +   GTTI GV Y  G VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG
Sbjct:   28 DFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            GTTI GV Y  G VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSG 213          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            GTTI GV Y  G VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSG 213          
The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PB6LB_SALSA6.720e-3942.08Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA1.146e-3842.08Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB6_ENCCU3.451e-3541.76Probable proteasome subunit beta type-6 OS=Encepha... [more]
PSB7_DICDI1.152e-2233.16Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7B_ARATH2.401e-2031.12Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH6.987e-2030.61Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_RAT2.248e-1828.34Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE2.248e-1828.34Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN2.935e-1829.07Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_PIG3.834e-1829.07Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC34110C02EF PostHarvP1 Citrus clementina cDNA clone C34110C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bp
AAAGAAGCAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAGGGCATT
TAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATG
GAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGGCGTCAC
TTACAACGGCGGCTTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGG
TGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAAT
GTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGA
CTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTG
CAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAAC
AAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGA
AGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGC
CTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGAT
CAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAAGCATTAGTGGT
TAAAGCAGTTTCTCTTGCCATTGCGCGTGATGGTGCTAGTGGAGGTGTTG
TTCGAACCGTCACATTAATT
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