FC930898

Overview
NameFC930898
Unique NameFC930898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:24..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 50/172 (29.07%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            GTTI GV Y  G VLGAD+R + G+ VA++   KI  ++ N+Y C +G+AAD+   +  +   L  H++  G+   V  A  +++ + +  + ++   +++GG D   G  +Y +   G+  + P+             F+  ++  M +EEA+ LV +A++  I  D  SG
Sbjct:   43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVD-VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSG 213          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  116 PHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            PH+   GTTI G+ +  G +LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +  V   +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++YGV   G+    PF              +  ++  MT E A+ L+V+AV+  I  D  SGG V
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 51/181 (28.18%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  116 PHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            PH+   GTTI G+ +  G +LGAD+R +    VA++  +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  + ++   +IVGG D + G ++Y V   G+    PF              +  ++  MT E A+ L+V+A++  I  D  SGG V
Sbjct:   33 PHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVD-FTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_SULSO (Proteasome subunit beta OS=Sulfolobus solfataricus GN=psmB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVK-VAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG-GVV 652
            GTT +G+  N G +L AD R S G +VAN+   K+  +TD + +  +GS AD Q + D ++   H ++I    P ++K +A  L  +LS          +++GG+D  +  +++ +   G I E+ +           G  +  +   MT +EA  L  +AV  AI RD  +G GV+
Sbjct:   14 GTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVADLQFIYDVLKNIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYD--DQPRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDSFTGTGVI 188          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 49/175 (28.00%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTTI G+ +  G +LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   +IVGG D   G ++Y V   G+    PF              +  ++  MT E A+ L+V+A++  I  D  SGG V
Sbjct:   39 GTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVD-LNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + YN +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  MT EEA  L  +A+  A  RDGASGGVV
Sbjct:   55 GTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSP-YAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVV 229          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  119 HSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGV 649
            H+ GTT +   + GG ++ ADSR S G Y+++++  KI ++   +    +G AAD Q     +      H +   +  +V  A+ L+  + Y+ +   L  G ++ GWD+   G  Y    GG +    F++      Y YG  D  +K  M+ EEA  L  +++  A  RDGASGGV
Sbjct:   54 HAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGV 230          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 50/181 (27.62%), Postives = 87/181 (48.07%), Query Frame = 2
Query:  116 PHSM--GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            PH+   GTTI G+ +  G +LGAD+R +    VA+++ +KI  +   +Y C +G AAD++  +      +  H +  G+   V     ++R   +  +  +   ++VGG D   G ++Y V   G+    PF              +  ++  MT E A+ L+V+A++  I  D  SGG V
Sbjct:   33 PHARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNV 212          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTT +G+    G VL AD R S G  +  R   KI ++ +++ +  +G   D   +   +R     +  Q G+  +VK  A L+  +    K F      +VGG+D  E  K+Y V + G I E  +A       + Y   D  +K+ +T EE   L VKA++ AI RD  SG  +  VT+
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYD--EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTI 188          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 53/188 (28.19%), Postives = 92/188 (48.94%), Query Frame = 2
Query:  110 NAPHSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV-PLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            N  +  GTT +GV    G VL ++ R + G ++A++ + K+ Q+ D V +  +GS  D+Q +   V      + ++  +  T+K    L+   LS N    +   +++GG DK  G  IY +  +GG+I E   +         YG  +  ++E MT +E   L ++A+  A  RD ASG  +  V +
Sbjct:    3 NDKYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDK-NGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVI 189          
The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PSB7_HUMAN3.834e-1829.07Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB10_HUMAN1.903e-1729.83Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSB10_BOVIN7.230e-1728.18Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSMB_SULSO3.588e-1629.94Proteasome subunit beta OS=Sulfolobus solfataricus... [more]
PSB10_RAT3.588e-1628.00Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB5_SPIOL4.686e-1631.82Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5A_ARATH4.686e-1630.34Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB10_MOUSE4.686e-1627.62Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSMB_PYRHO2.326e-1530.94Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_METTE6.767e-1528.19Proteasome subunit beta OS=Methanosarcina thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC34110C02EF PostHarvP1 Citrus clementina cDNA clone C34110C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bp
AAAGAAGCAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAGGGCATT
TAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATG
GAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGGCGTCAC
TTACAACGGCGGCTTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGG
TGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAAT
GTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGA
CTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTG
CAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAAC
AAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGA
AGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGC
CTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGAT
CAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAAGCATTAGTGGT
TAAAGCAGTTTCTCTTGCCATTGCGCGTGATGGTGCTAGTGGAGGTGTTG
TTCGAACCGTCACATTAATT
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