FC930898

Overview
NameFC930898
Unique NameFC930898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14276 contig Ccv1_Contig14276:24..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G V+  DSR + G Y+A++   K+ ++  ++    +G AAD       +      + ++  +P +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I  + FA+      Y YG  D   +  M  +EA  L  +A+  A  RD  SGG V
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAV-GSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSV 229          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G +   DSR S G Y++    +K+ ++   +    SG AAD Q     +      + ++ G+  +V  A+ L+  +    +   L  G ++ GWDK +G  +Y V   GT +            Y YG  D  ++  ++ EEA  L  +A++ A  RD  SGGVV
Sbjct:   72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 246          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 49/189 (25.93%), Postives = 87/189 (46.03%), Query Frame = 2
Query:   89 DLKMEDFNAPHSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            D +  D     + GTT +   + GG ++  DSR + G +VA++   K+ ++   +    +G AAD Q    ++      H ++  +  +V  A+ ++  L Y  K   L  G ++ G+ + EG  IY V   GT ++           + YG  D  +K  ++ E+A  L  +++  A  RD  SGG V
Sbjct:   62 DSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 250          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 53/176 (30.11%), Postives = 85/176 (48.30%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G +  AD+R+S G YVA  AS K+  +  ++    SG++AD  T    ++  L    ++ GQ  +V  AA L+  +    +   L     + GWD+  G +++ V   GT ++           Y YG  D+ ++  M+ +EA AL   AV+ A  RD  SGG V
Sbjct:   49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDR-SGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSV 223          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 44/194 (22.68%), Postives = 94/194 (48.45%), Query Frame = 2
Query:   68 ECFRGKMDLKMEDFNAPH--SMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643
            E ++  + L+ + F  P   S GTTI+GV      VLGAD+R + G  +A++   K+  ++ N++   +G+AAD++ V+  +   +  H++   +   V  A  +++   +  +  +   +++GG+D  +G  ++ +   G+  + P+              +  ++  + + EA  LV +A+   I  D  SG
Sbjct:   13 EYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 54/176 (30.68%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G +  AD+R+S G YVA  AS K+  +   +    SG++AD  T    +R  L    ++ GQ P+    A  L  ++S      L     + GWD + G  ++ V   GT ++           Y YG  D+ +   MT +EA  L   AV+ A  RD  SGG V
Sbjct:   49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWD-HSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSV 223          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSV 233          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-------RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667
            GTT +G+  + G VL AD R S G  V  +   KI ++ +++ +  +G   D   +   +R     +  Q G+  +VK  A L+       R+L Y          +VGG+D  E  ++Y V + G I E  +        + Y   D  ++E +   E   + V+A++ AI RD  SG  +  VT+
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPY------LAWFLVGGFD--EKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 47/176 (26.70%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  E+A  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233          
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 2
Query:  128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652
            GTT +   +  G ++ ADSR + G Y+A++   K+ ++   +    +G AAD       +      + ++  +  +V  A+ L+  + Y  K   L  G ++ GWDK   G  Y    G  I    F++      Y YG  D+ +   +  EEA  L  +A+  A  RD  SGG V
Sbjct:   59 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 233          
The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PSB5_CHICK1.843e-1228.41Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]
PSB8_HUMAN3.143e-1227.84Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB5_YEAST3.143e-1225.93Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB11_HUMAN4.105e-1230.11Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB7_SCHPO9.146e-1222.68Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB11_MOUSE1.195e-1130.68Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB5_BOVIN1.560e-1127.27Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSMB_PYRAB2.038e-1127.27Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSB5_PONAB2.038e-1126.70Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_MOUSE2.038e-1127.27Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34110C02EF PostHarvP1 Citrus clementina cDNA clone C34110C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bp
AAAGAAGCAAAATTAAAATTAAACTCAAAATTAAAATTGTTAAGGGCATT
TAGAAATTGTGGTAAGTGAGTGTTTTAGAGGAAAGATGGATCTGAAGATG
GAAGATTTTAACGCGCCACACTCGATGGGTACTACTATCATCGGCGTCAC
TTACAACGGCGGCTTTGTCCTCGGCGCCGATTCTCGTACTAGCACCGGGG
TGTATGTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAAT
GTCTACCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGA
CTATGTTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTG
CAACTGTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAAC
AAGAACTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGA
AGGTGGTAAAATATATGGAGTTCCTCTTGGAGGAACAATAATTGAGCAGC
CTTTTGCAATTGGAGGATCTGGCTCAAGTTACCTGTATGGGTTTTTTGAT
CAGGCATGGAAAGAGGGAATGACCAAGGAAGAAGCTGAAGCATTAGTGGT
TAAAGCAGTTTCTCTTGCCATTGCGCGTGATGGTGCTAGTGGAGGTGTTG
TTCGAACCGTCACATTAATT
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