FC930898
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12 Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G V+ DSR + G Y+A++ K+ ++ ++ +G AAD + + ++ +P +V A+ L+ + Y K L G ++ GWDK G Y G I + FA+ Y YG D + M +EA L +A+ A RD SGG V Sbjct: 55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAV-GSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSV 229
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G + DSR S G Y++ +K+ ++ + SG AAD Q + + ++ G+ +V A+ L+ + + L G ++ GWDK +G +Y V GT + Y YG D ++ ++ EEA L +A++ A RD SGGVV Sbjct: 72 GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK-KGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVV 246
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 49/189 (25.93%), Postives = 87/189 (46.03%), Query Frame = 2 Query: 89 DLKMEDFNAPHSMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 D + D + GTT + + GG ++ DSR + G +VA++ K+ ++ + +G AAD Q ++ H ++ + +V A+ ++ L Y K L G ++ G+ + EG IY V GT ++ + YG D +K ++ E+A L +++ A RD SGG V Sbjct: 62 DSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSV 250
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12 Identity = 53/176 (30.11%), Postives = 85/176 (48.30%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G + AD+R+S G YVA AS K+ + ++ SG++AD T ++ L ++ GQ +V AA L+ + + L + GWD+ G +++ V GT ++ Y YG D+ ++ M+ +EA AL AV+ A RD SGG V Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDR-SGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSV 223
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12 Identity = 44/194 (22.68%), Postives = 94/194 (48.45%), Query Frame = 2 Query: 68 ECFRGKMDLKMEDFNAPH--SMGTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASG 643 E ++ + L+ + F P S GTTI+GV VLGAD+R + G +A++ K+ ++ N++ +G+AAD++ V+ + + H++ + V A +++ + + + +++GG+D +G ++ + G+ + P+ + ++ + + EA LV +A+ I D SG Sbjct: 13 EYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11 Identity = 54/176 (30.68%), Postives = 80/176 (45.45%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQ-PATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G + AD+R+S G YVA AS K+ + + SG++AD T +R L ++ GQ P+ A L ++S L + GWD + G ++ V GT ++ Y YG D+ + MT +EA L AV+ A RD SGG V Sbjct: 49 GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWD-HSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSV 223
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11 Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G ++ ADSR + G Y+A++ K+ ++ + +G AAD + + ++ + +V A+ L+ + Y K L G ++ GWDK G Y G I F++ Y YG D+ + + EEA L +A+ A RD SGG V Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSV 233
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11 Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLV-------RLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVVRTVTL 667 GTT +G+ + G VL AD R S G V + KI ++ +++ + +G D + +R + Q G+ +VK A L+ R+L Y +VGG+D E ++Y V + G I E + + Y D ++E + E + V+A++ AI RD SG + VT+ Sbjct: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPY------LAWFLVGGFD--EKPRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11 Identity = 47/176 (26.70%), Postives = 79/176 (44.89%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G ++ ADSR + G Y+A++ K+ ++ + +G AAD + + ++ + +V A+ L+ + Y K L G ++ GWDK G Y G I F++ Y YG D+ + + E+A L +A+ A RD SGG V Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAV 233
BLAST of FC930898 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11 Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 2 Query: 128 GTTIIGVTYNGGFVLGADSRTSTGVYVANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNF-LQTGMIVGGWDKYEGGKIYGVPLGGTIIEQPFAIXXXXXXYLYGFFDQAWKEGMTKEEAEALVVKAVSLAIARDGASGGVV 652 GTT + + G ++ ADSR + G Y+A++ K+ ++ + +G AAD + + ++ + +V A+ L+ + Y K L G ++ GWDK G Y G I F++ Y YG D+ + + EEA L +A+ A RD SGG V Sbjct: 59 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSV-GSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAV 233 The following BLAST results are available for this feature:
BLAST of FC930898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930898 ID=FC930898; Name=FC930898; organism=Citrus clementina; type=EST; length=670bpback to top |