FC930900

Overview
NameFC930900
Unique NameFC930900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE_HELPJ (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori J99 GN=ilvE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  287 EPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFI-PDARGYSLYLRPTMIG 673
            E +D K+L F    TD      +     W    +V    L L   + V HY   CFEG+KAY+   G   LFRP +N +RL  S  R+ +P V  +   K   E++K + +++ P   G SLYLRP +IG
Sbjct:    5 ENLDWKNLGFSYIKTDFRFIATYKNGS-WSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRPFVIG 133          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT5_ARATH (Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  266 TKTTTPKEPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            T   T    +D   + FG   TD+M +++ +    +   ++ P+ N+ ++PA  V +Y    FEG+KAY+   G I LFRP +N  R+   + R+ +P+   +   + +   V  + R+IP     SLY+RP ++GT
Sbjct:   73 TTDVTELAEIDWDKIDFGLKPTDYMYAMKCSRDGEFSQGQLQPFGNIDINPAAGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAIRMRNGAERMCMPSPTVEQFVEAVKTTVLANKRWIPPPGKGSLYIRPLLMGT 209          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: ILVE_HELPY (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori GN=ilvE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  287 EPMDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFI-PDARGYSLYLRPTMIG 673
            E +D K+L F    TD      +     W    +V    L L   + V HY   CFEG+KAY+   G   LFRP +N +RL  S  R+ +P V  +   +   E+VK + +++ P   G SLYLRP +IG
Sbjct:    5 ENLDWKNLGFSYIKTDFRFIATYKNGS-WSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLRACAEVVKANQKWLAPYKSGASLYLRPFVIG 133          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT7_ARATH (Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 35/124 (28.23%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  305 DLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            +L F    TD+M   +    + +    IVPY ++ + P   + +Y    FEG+KAY+   G I LFRP++N  R+   + R+ +     +   + + + V  +++++P     +LY+RP +IGT
Sbjct:   28 ELGFALVPTDYMYVAKCKQGESFSTGEIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNAIRMQTGADRLCMTPPSPEQFVEAVKQTVLANNKWVPPPGKGALYIRPLLIGT 151          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT4_ARATH (Probable branched-chain-amino-acid aminotransferase 4 OS=Arabidopsis thaliana GN=BCAT4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 2
Query:  302 KDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            ++L F    TD+M   +    + +   +I+P+ +L L+P   V  Y    +EG+KAY+   G I LFRP++N  RL   + R+ +P    D     I ++   + ++IP     +LY+RP + G+
Sbjct:   23 EELAFKFVRTDYMYVAKCNHGESFQEGKILPFADLQLNPCAAVLQYGQGLYEGLKAYRTEDGRILLFRPDQNGLRLQAGADRLYMPYPSVDQFVSAIKQVALANKKWIPPPGKGTLYIRPILFGS 147          
BLAST of FC930900 vs. ExPASy Swiss-Prot
Match: BCAT2_ARATH (Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 36/128 (28.12%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  293 MDSKDLVFGKYFTDHMLSVEWTAADGWHAPRIVPYQNLILDPATCVFHYAFECFEGMKAYKDSTGGIRLFRPNKNMERLNKSSARIALPTVDGDALTKIIGELVKLDSRFIPDARGYSLYLRPTMIGT 676
            +D  +L FG    D+M  ++ +    +    + PY N+ L P+  V +Y    +EG KAY+   G + LFRP+ N  R+   + R+ +P+   D     + +    + R++P A   +LY+RP ++G+
Sbjct:   56 LDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGS 183          
The following BLAST results are available for this feature:
BLAST of FC930900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ILVE_HELPJ1.299e-1335.38Branched-chain-amino-acid aminotransferase OS=Heli... [more]
BCAT5_ARATH1.697e-1329.93Branched-chain-amino-acid aminotransferase 5, chlo... [more]
ILVE_HELPY3.781e-1335.38Branched-chain-amino-acid aminotransferase OS=Heli... [more]
BCAT7_ARATH4.180e-1228.23Putative branched-chain-amino-acid aminotransferas... [more]
BCAT4_ARATH5.459e-1229.60Probable branched-chain-amino-acid aminotransferas... [more]
BCAT2_ARATH2.075e-1128.13Branched-chain-amino-acid aminotransferase 2, chlo... [more]

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Properties
Property NameValue
Genbank descriptionC34110C04EF PostHarvP1 Citrus clementina cDNA clone C34110C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930900 ID=FC930900; Name=FC930900; organism=Citrus clementina; type=EST; length=676bp
GGAGCTTCGCAGGGATACTGCACTGTAGTTCTGGTGTCGAGTCATCTTTC
TAGTTGTTATTTTTTAAATCCCCATTGACTTCCTTGATATCATCATGAAG
TCGCTTCACCAATTTGCTCGCCGACAGGCATTGACCGGGCTCGCAATGCC
CCGCGTCCTCTCATCCCAGAAAATTGCCGCCAGCCAAACATGGCTGAGAG
CTTTCAGTGCCTCCAGAGCAGCCGCCTCCCAGCTCCCGGGTCTTGACGCT
TCGAAATTGACGATCACCAAGACCACCACCCCGAAGGAGCCAATGGACTC
TAAGGATCTTGTCTTTGGTAAATACTTCACAGATCATATGCTCTCTGTGG
AGTGGACGGCTGCCGATGGATGGCACGCACCTCGCATTGTTCCCTACCAG
AACCTCATCTTAGATCCTGCAACCTGTGTGTTCCACTATGCATTTGAATG
TTTCGAGGGCATGAAGGCATACAAGGACAGCACCGGCGGCATCCGTTTGT
TTCGCCCCAACAAGAACATGGAACGCCTAAACAAGTCGTCTGCGCGCATT
GCTCTTCCTACCGTGGACGGTGATGCACTAACAAAAATAATTGGAGAGCT
TGTGAAGCTCGACAGTCGGTTCATCCCGGATGCTCGCGGCTACTCCTTGT
ACCTGCGCCCTACCATGATTGGTACC
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