FC930903

Overview
NameFC930903
Unique NameFC930903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15233 contig Ccv1_Contig15233:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_PSEST (P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  370 LRVAYQGVRGAYSESAAEKAYPNCE-AVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            LRVAY G  G +S++AA K + +   + P    D  F  V    V+  V+P+ENS  G+++   D  L H + I GEV+  + H LL     K + + R+ SH Q+LAQC
Sbjct:   95 LRVAYLGPEGTFSQAAALKHFGHSVISKPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGETTKTDRITRIYSHAQSLAQC 204          
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_SHIFL (P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  358 NGSRLRVAYQGVRGAYSESAAE----KAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            N    R+A+ G +G+YS  AA     + +       C +F   F  VE    D AV+PIEN+  G+I+  YDLL    L IVGE+   + HCLL +    +  +  V SHPQ   QC
Sbjct:  100 NPHSARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQC 216          
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_ECOLI (P-protein OS=Escherichia coli (strain K12) GN=pheA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  358 NGSRLRVAYQGVRGAYSESAAE----KAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            N    R+A+ G +G+YS  AA     + +       C +F   F  VE    D AV+PIEN+  G+I+  YDLL    L IVGE+   + HCLL +    +  +  V SHPQ   QC
Sbjct:  100 NPHSARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQC 216          
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_ECO57 (P-protein OS=Escherichia coli O157:H7 GN=pheA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 1
Query:  358 NGSRLRVAYQGVRGAYSESAAE----KAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            N    R+A+ G +G+YS  AA     + +       C +F   F  VE    D AV+PIEN+  G+I+  YDLL    L IVGE+   + HCLL +    +  +  V SHPQ   QC
Sbjct:  100 NPHSARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQC 216          
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_BUCAI (P-protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=pheA PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  379 AYQGVRGAYSESAAEKA----YPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            ++ G +G+YS  AA K     +  C    C  F+    +VE    D AVLPIEN+  GSI+  +D+L +  L I+GE+   + H LL    +++  +K + SHPQ   QC
Sbjct:  107 SFLGPKGSYSHIAAYKYADLNFQKCITNECSTFEEVVLSVENNQSDYAVLPIENTCSGSINEVFDILKKTNLFIIGEINIFINHNLLTLKKIELNKIKTIYSHPQPFQQC 216          
BLAST of FC930903 vs. ExPASy Swiss-Prot
Match: PHEA_NEIG1 (P-protein OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pheA PE=4 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 42/110 (38.18%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  370 LRVAYQGVRGAYSESAAEKAYPNC-EAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVXSHPQALAQC 696
            L +AY G +G +++ AA K + +    + C   D  F+ VE    D  V P+ENS  GS+ R  DLL    L   GEV   + H LL       E + +V SH QALAQC
Sbjct:   90 LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDDCFKQVETRQADYLVAPVENSTEGSVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQC 199          
The following BLAST results are available for this feature:
BLAST of FC930903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PHEA_PSEST4.168e-1337.27P-protein OS=Pseudomonas stutzeri GN=pheA PE=4 SV=... [more]
PHEA_SHIFL5.444e-1336.75P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1[more]
PHEA_ECOLI5.444e-1336.75P-protein OS=Escherichia coli (strain K12) GN=pheA... [more]
PHEA_ECO575.444e-1336.75P-protein OS=Escherichia coli O157:H7 GN=pheA PE=3... [more]
PHEA_BUCAI1.584e-1235.45P-protein OS=Buchnera aphidicola subsp. Acyrthosip... [more]
PHEA_NEIG12.069e-1238.18P-protein OS=Neisseria gonorrhoeae (strain ATCC 70... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110C07EF PostHarvP1 Citrus clementina cDNA clone C34110C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930903 ID=FC930903; Name=FC930903; organism=Citrus clementina; type=EST; length=715bp
AAGTCACCCGTGGCTGAGTCTCGCTGTCTCACGCGTTGATTAATGGCGGC
CTCCGTTGCGCGATCACAGCTGACCCCACTTTCGCGACAGATCACTGCTA
AACCCTCTCAGTCGGATCAAACACCAAAATGCATCGTCAGATTCCGTCCG
CTTAACATCCCACGGCGGTTTAACGTTGCCGTTAAGGCCTCTATTAACCG
AAACGATGAGAAAATCGGCGGTAACAATAACAAAACCGCTCCGGCGCTTC
ACCCGCAGAGCATTCTCGATGATGATGAAGAGGACGCCGCTTCGAATGAT
TCGTTGAATTCGCTTCCCCGGCCTTTGTCTTCGGCTCAGTTTTCAAATTT
TGTATCCAACGGGTCCCGCCTTCGAGTTGCGTACCAGGGAGTTCGTGGAG
CTTACAGCGAGTCAGCAGCAGAGAAAGCATACCCAAATTGCGAAGCGGTT
CCTTGCGAGCAATTTGACACTGCTTTTGAAGCTGTCGAGAGGTGGCTTGT
AGACAGAGCAGTTTTACCCATTGAGAATTCTTTGGGTGGCAGCATCCACA
GAAATTATGATCTCTTACTCCGGCACAGGTTGCACATAGTAGGGGAAGTT
AAATTTGCTGTCCGACACTGCCTACTAGCCAATCCTGGTGTTAAAGTTGA
GGACTTGAAAAGGGTTCNTAGCCATCCTCAGGCTCTTGCTCAATGTGAGA
CACACTAACGAAATT
back to top