FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:621..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRSY (Elongation factor Tu OS=Streptococcus suis (strain 05ZYH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   SK         F  +V I+    + G  + P  D +      + +++   I    G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--SKPGSINPHTKFKGEVYILTK--EEGGRHTPFFDNYRPQFYFRTTDVTGSIKLPEGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRS2 (Elongation factor Tu OS=Streptococcus suis (strain 98HAH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L GDNVG  ++ V   +++RG V   SK         F  +V I+    + G  + P  D +      + +++   I    G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGLQEEKSKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVI--SKPGSINPHTKFKGEVYILTK--EEGGRHTPFFDNYRPQFYFRTTDVTGSIKLPEGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRGC (Elongation factor Tu OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 48/166 (28.92%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L++ +D  I EP+R +DKPL LP++DV+ I G GTV  GR++ G++K    +     G+  E++      VEM  + L E L GDNVG  ++ +   +++RG V   +K         F  +V I+    + G  + P  + +      + +++   I+  +G E+
Sbjct:  195 LMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEI--VGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVI--AKPGSINPHTKFKGEVYILTK--EEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEM 354          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_STRAU (Elongation factor Tu OS=Streptomyces aureofaciens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 402
            L+DA+D  I  P R +DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V
Sbjct:  194 LMDAVDEAIPTPPRDTDKPFLMPVEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQV 295          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 55/193 (28.50%), Postives = 94/193 (48.70%), Query Frame = 1
Query:   49 FEGDNM-IERSTNLDWYKGPT--------LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            F+GDN  + R  +L   +G          LL ALD+ I EP R  DKP  + ++DV+ I G GTV  GR+E GV+K G    ++ F  +  +  V  VEM  + L +   GDNVG  ++ V  ++++RG V   +K         FT +V ++    + G  + P    +     ++ +++   ++   G ++
Sbjct:  165 FDGDNAPVVRGASLPALQGDPKWEETIQQLLSALDSYIPEPVRDIDKPFLMAIEDVFSIKGRGTVATGRIERGVIKVGDEVQIIGFKDTKKSV-VTGVEMFRKLLDQGQAGDNVGCLLRGVEKEEIERGQVL--AKPGSITPHTKFTGEVYVLKK--EEGGRHTPFFTNYRPQFYIRTTDVTGTVNLPEGVKM 352          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SHEB8 (Elongation factor Tu OS=Shewanella baltica (strain OS185) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/163 (31.29%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEV--KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V       TT+     VEM  + L E   G+N G  ++     D++RG V   +K         F S+V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  192 LANALDSYIPEPQRDIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVL--AKPGSINPHTTFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM 350          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_SALTO (Elongation factor Tu OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  109 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+ A+D +I +P+R  +KP  +P++DV+ I G GTV  GR E GVLKP     +V        T    +EM  + L EA  G+NVG  ++ V  +D++RG V    K   A     F + V I++   + G  + P    +      + +++   +    G E+
Sbjct:  194 LMTAVDTSIPQPEREIEKPFLMPIEDVFTITGRGTVVTGRAERGVLKPNEEVELVGIREKSTKTTCTGIEMFRKLLDEARAGENVGLLLRGVKREDVERGMVV--IKPGTATPHTEFEATVYILSK--EEGGRHTPFFQNYRPQFYFRTTDVTGVVTLPEGTEM 353          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_OCEIH (Elongation factor Tu OS=Oceanobacillus iheyensis GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  109 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            L+ A+D  I  P+R  +KP  +P++DV+ I G GTV  GRVE G +K G    ++        T V  VEM  + L  A  GDN+G  ++ V+ +D+ RG V   +K        NF ++V +++   + G  + P    +      + +++   I+   G E+
Sbjct:  192 LMAAVDEYIPTPERDKEKPFMMPVEDVFSITGRGTVATGRVERGEVKVGDEVEIIGLAEDASKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDINRGQVL--AKPGSITPHTNFKAEVYVLSK--EEGGRHTPFFSNYRPQFYFRTTDVTGVIELPEGTEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_LISW6 (Elongation factor Tu OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   88 DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            DW  K   L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G    V+          V  VEM  + L  A  GDN+G  ++ VA +D++RG V   +K        NF ++  ++    + G  + P  + +      + +++   +    G E+
Sbjct:  184 DWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVL--AKPGSITPHTNFKAETYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEM 351          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EFTU_LISMO (Elongation factor Tu OS=Listeria monocytogenes GN=tuf PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   88 DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL 588
            DW  K   L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G    V+          V  VEM  + L  A  GDN+G  ++ VA +D++RG V   +K        NF ++  ++    + G  + P  + +      + +++   +    G E+
Sbjct:  184 DWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVL--AKPGSITPHTNFKAETYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEM 351          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRSY7.003e-1230.49Elongation factor Tu OS=Streptococcus suis (strain... [more]
EFTU_STRS27.003e-1230.49Elongation factor Tu OS=Streptococcus suis (strain... [more]
EFTU_STRGC7.003e-1228.92Elongation factor Tu OS=Streptococcus gordonii (st... [more]
EFTU_STRAU7.003e-1239.22Elongation factor Tu OS=Streptomyces aureofaciens ... [more]
EFTU_SORC57.003e-1228.50Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_SHEB87.003e-1231.29Elongation factor Tu OS=Shewanella baltica (strain... [more]
EFTU_SALTO7.003e-1229.88Elongation factor Tu OS=Salinispora tropica (strai... [more]
EFTU_OCEIH7.003e-1229.27Elongation factor Tu OS=Oceanobacillus iheyensis G... [more]
EFTU_LISW67.003e-1229.65Elongation factor Tu OS=Listeria welshimeri serova... [more]
EFTU_LISMO7.003e-1229.65Elongation factor Tu OS=Listeria monocytogenes GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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