FC930905

Overview
NameFC930905
Unique NameFC930905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:621..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.078e-84
Identity = 147/231 (63.64%), Postives = 184/231 (79.65%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            NP  V FVPISG+ GDNM+E ST + W+KG              L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P +P+ VE+
Sbjct:  170 NPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVES 400          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.078e-84
Identity = 147/231 (63.64%), Postives = 184/231 (79.65%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            NP  V FVPISG+ GDNM+E ST + W+KG              L++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P +P+ VE+
Sbjct:  170 NPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVES 400          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.528e-83
Identity = 151/230 (65.65%), Postives = 180/230 (78.26%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            N   V FVPISG+ GDNM+E S    WYKG             TL++ALD I  P RP+DK LRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTF P+ LTTEVKSVEMHHEAL EALPGDNVGFNVKN++VK+L+RG+VA +SK+ P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + P +PM VE
Sbjct:  184 NTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVE 413          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.404e-83
Identity = 141/217 (64.98%), Postives = 181/217 (83.41%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            +KV F+PISGFEGDN+IE+S    WYKG TL++ALD +  PKRP DKPLR+PLQ VYKIGGIGTVPVGRVETG+LK GMV+ F PS + +E KSVEMH E L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P +PMVVET
Sbjct:  184 DKVDFIPISGFEGDNLIEKSDKTPWYKGRTLIEALDTMQPPKRPYDKPLRIPLQGVYKIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVET 400          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.868e-81
Identity = 139/217 (64.06%), Postives = 178/217 (82.03%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            E++PF+PISGF GDNMIE S N+ WYKGPTLL+ALDN++ PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM VTF P  ++TEVKSVEMHHE++ +ALPGDNVGFNV NV+V+D+ RG V  ++K+DP  +  +  +QVI+MNHP  I  GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P +PM VET
Sbjct:  188 ERIPFIPISGFNGDNMIEHSANMPWYKGPTLLEALDNVHPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMTVTFAPVNVSTEVKSVEMHHESIPQALPGDNVGFNVNNVSVEDIHRGNVCGDAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVET 403          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.086e-79
Identity = 144/231 (62.34%), Postives = 177/231 (76.62%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTL------------LDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            NP  V FVPISG+ GDNM+E S+N+ W KG  +              ALD I  P RP+D+ LRLPL DVYKIGGIGTVPVGR+ETG+LKPG VV F P+ +TTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P +P+ VE+
Sbjct:  133 NPVAVAFVPISGWHGDNMLEPSSNMRWLKGWKVERINGNGEGKCGSXALDAILPPPRPTDQALRLPLPDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVES 363          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.874e-76
Identity = 135/230 (58.70%), Postives = 172/230 (74.78%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            NP  +PFVP+SG+ G+N+   S  + W+KG             +LL+ LD +  P RP++KPLRLPLQDVYKIGGIGTVPVG++ETG+LKPGM ++F PSG + EVKS+EMHHE LQ A PG N+GFNVKN+AVK LKRG VA NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P +P  VE
Sbjct:  187 NPATIPFVPVSGWTGENISSPSQKMGWFKGWKVKRKDGFTKGQSLLEVLDALVPPVRPANKPLRLPLQDVYKIGGIGTVPVGKIETGILKPGMTISFAPSGFSAEVKSIEMHHEPLQMAFPGFNIGFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVE 416          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.027e-71
Identity = 129/216 (59.72%), Postives = 168/216 (77.78%), Query Frame = 1
Query:   19 EKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            E V ++PISGF+GDNM+E+S NL WYKGPTL +ALD    PKRP  KPLR+P+QDVYKI GIGTVPVGRVETGVLK GM V F  +G T+EVKS+E HH  L+EA PG NVGFNV+ +  K++K G V  ++K+DP + A +F +QVI+MNHPG I  GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++P +P+ VE
Sbjct:  185 ENVKYIPISGFDGDNMLEQSENLPWYKGPTLTEALDEFKVPKRPIKKPLRVPIQDVYKIAGIGTVPVGRVETGVLKRGMEVQF-TTGATSEVKSLEAHHNKLEEAEPGLNVGFNVR-LEAKEIKAGHVCGDAKNDPPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVE 398          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.316e-70
Identity = 121/222 (54.50%), Postives = 162/222 (72.97%), Query Frame = 1
Query:    4 GWINPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVET 669
            GW   E+  ++P SG+ GDN++E+S  + WY+GP L+DA+D +  PKRP+DKPLRLP+QDVYKI G+GTVP GRVETG L PGM V F P+   +EVKSVEMHHE L++A PGDNVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P +P+  ET
Sbjct:  162 GWKKAEEFDYIPTSGWTGDNIMEKSDKMPWYEGPCLIDAIDGLKAPKRPTDKPLRLPIQDVYKISGVGTVPAGRVETGELAPGMKVVFAPTSQVSEVKSVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCET 383          
BLAST of FC930905 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.419e-67
Identity = 113/218 (51.83%), Postives = 164/218 (75.23%), Query Frame = 1
Query:   13 NPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPHQPMVVE 666
            NP+++ F+P +  +GDN+++RS N+ WYKGPTL++ALD    P++P++ PLR+P+QDVY I G+GTVPVGRVETG+L+PG  V F P+G++ EVKS+EMHHE + +A PGDN+GFNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ P +PMV+E
Sbjct:  179 NPDQIDFIPTASLKGDNVVKRSENMPWYKGPTLVEALDKFQPPEKPTNLPLRIPIQDVYSITGVGTVPVGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDVCGH-PDNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIE 395          
The following BLAST results are available for this feature:
BLAST of FC930905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ANIIF3.078e-8463.64Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE3.078e-8463.64Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_APIME1.528e-8365.65Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_PLAFK3.404e-8364.98Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_BLAHO1.868e-8164.06Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_RHYAM5.086e-7962.34Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A1_XENLA6.874e-7658.70Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A2_EUPCR1.027e-7159.72Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_GIALA4.316e-7054.50Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_METJA3.419e-6751.83Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC34110C09EF PostHarvP1 Citrus clementina cDNA clone C34110C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930905 ID=FC930905; Name=FC930905; organism=Citrus clementina; type=EST; length=671bp
CGGGGTTGGATCAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTT
CGAGGGTGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGG
GTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCC
TCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGG
CATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTG
GTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCT
GTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGT
TGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTG
TTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACC
TCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGC
CCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGC
TCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCC
AAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATGATTCCCCACCA
GCCCATGGTTGTTGAGACCTT
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