FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:16..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: PHNC_ANAVT (Phosphonates import ATP-binding protein phnC OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=phnC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 59/215 (27.44%), Postives = 100/215 (46.51%), Query Frame = 1
Query:    7 MNYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS---GYCEQTDIHSPHVTLYESLLY------SAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIH 621
            M+ YV     ++T  VG     +L+ +S   + G    L+G++GAGK+TL+  L G      ++G++ I+G         ++    G   Q     P ++  E++L       + W  L      K+ ++   E++E + L+ L          + LS  Q++R+ IA  L+ +P I+  DEPT+GLD  A   VM T+       G TVV  +H
Sbjct:    1 MSDYVIECHNLETAYVGSLNRPILNEISCHIKQGEFVVLLGLNGAGKSTLLRSLVGLVP--LVKGEVHINGVAMNSRILPQIRRDVGMLFQGGGLIPQLSAIENVLCGRLGTRTTWQTLFGF--PKRDRLLALELLEQLGLREL-----AYQRTSKLSGGQQQRVAIARALIQSPQILLADEPTTGLDVIATQQVMETLAELHTQQGMTVVAVLH 206          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHILV (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae GN=nodI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 51/186 (27.42%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK-QETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++ +S     G    L+G +GAGK+T+  ++ G  +     G I + G  +  Q   AR   G   Q D      T+ E+LL Y  + R+S    T++ +  +  ++E   L+   +  V       LS   ++RLT+A  L+ +P ++ +DEPT+GLD  A  ++   +R+ +  G+T++ T H
Sbjct:   27 VVNDLSFTIAAGECFGLLGPNGAGKSTITRMILGMTSPSV--GKITVLGAQEPGQVRLARAKIGIVSQFDNLDLEFTVRENLLVYGRYFRMS----TREIETVIPSLLEFARLESKANTRVA-----DLSGGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 201          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHIL3 (Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nodI PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 51/186 (27.42%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKK-QETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++ +S     G    L+G +GAGK+T+  ++ G  +     G I + G  +  Q   AR   G   Q D      T+ E+LL Y  + R+S    T++ +  +  ++E   L+   +  V       LS   ++RLT+A  L+ +P ++ +DEPT+GLD  A  ++   +R+ +  G+T++ T H
Sbjct:   27 VVNDLSFTIAAGECFGLLGPNGAGKSTITRMILGMTSPSV--GKITVLGAQEPGQVRLARAKIGIVSQFDNLDLEFTVRENLLVYGRYFRMS----TREIETVIPSLLEFARLESKANTRVA-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 201          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BRAJA (Nod factor export ATP-binding protein I OS=Bradyrhizobium japonicum GN=nodI PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 59/207 (28.50%), Postives = 103/207 (49.76%), Query Frame = 1
Query:   10 NYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            N  +D+    K+ G   D++ +++ +S +   G    L+G +GAGK+T+  +L G  +     G I +   P   +   ARV  G   Q D   P  T+ E+LL +  +  +S+    +  +  V  ++E   L+   D  V L     LS   ++RLT+A  L+ +P ++ MDEPT+GLD  A  ++   +R  +  G+T++ T H
Sbjct:    5 NMAIDLVGVRKSFG---DKV-IVNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLDEPVPSRARAARVRVGVVPQFDNLEPEFTVRENLLVFGRYFGMSA----RTIEAVVPSLLEFARLESKADVRVSL-----LSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKTILLTTH 196          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: MNTB_LISMO (Manganese transport system ATP-binding protein mntB OS=Listeria monocytogenes GN=mntB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 54/192 (28.12%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  106 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            G LT ++G +GAGK+TL+  + G   R+ G     D  ++ + KK     + S    + D+  P +T+++ +L   +  L       KK K    + +E VE+       +G      LS  Q +R+ IA  L  +  I F+DEP +G+D  + A++MR ++   D G+T+V  +H     +   FD+++L+
Sbjct:   26 GKLTGIVGPNGAGKSTLLKGMMGLIPREQGQVTLADKPLTYWRKKIAYVPQRS----EVDLTFP-ITVFDMVLLGTYPALGLIKRPGKKEKQLALDALEQVEMTGFMKRQIG-----ELSGGQLQRVFIARALAQHAEIFFLDEPFAGIDMTSEALIMRLLKKLRDNGKTIV-VVHHDFHKVAAYFDDIILL 206          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: HMUV_RHOP2 (Hemin import ATP-binding protein hmuV OS=Rhodopseudomonas palustris (strain HaA2) GN=hmuV PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 56/208 (26.92%), Postives = 92/208 (44.23%), Query Frame = 1
Query:   34 EMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSS-DVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIA--------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            E +  G       L+H+V  A   G L A++G +GAGK+TL+ +L+G  R T G +  GD ++S Y  ++          ++  + + H+ +         +R+ + DV  +K    +D  +  V L   R        +  LS  +++R   A         E V  P I+ +DEPTS LD R    +  T R     G TV+  +H
Sbjct:    6 EARKAGFATGGATLVHNVDLAVAQGELIAIVGPNGAGKSTLLRMLSGDLRPTSGSVRLGDRELSSYSPRE--------LADRRAVLAQHINVSFPFTVEEIVRMGTGDVGHRKAGALIDAALHEVGLGEFRSR-----DITTLSGGEQQRAHFARVLVQLWSSEAVRGPGILLLDEPTSSLDIRHQLDLAHTARRCARNGATVIAILH 200          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: CYSA_BACHD (Sulfate/thiosulfate import ATP-binding protein cysA OS=Bacillus halodurans GN=cysA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 56/207 (27.05%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            Q L  ++ +   G L AL+G SG+GKT+L+ ++AG +     +GDI      K  +T A  R  G+  Q     PH+T+ +++ Y   LR+    +   +K   ++V EL+       ALV L G++      LS  QR+R+ +A  L   P ++ +DEP   LDA+    + + +R   +  +     +     +  +  D +++M
Sbjct:   16 QALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEAAD--QGDIYFHK-DKVTQTHAASRQVGFVFQHYALFPHMTVADNISYG--LRVKPRKERPSKKEIAEKVRELL-------ALVKLEGMDDRYPAQLSGGQRQRIALARALAVEPKVLLLDEPFGALDAKVRKDLRKWLRKLHNEFQVTSVFVTHDQEEALDVSDRVVVM 210          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 53/191 (27.75%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   67 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ---ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 630
            +++L+++S   +PG +TAL+G SGAGK+T + ++   +  G  EG + +  +  +    +      G  EQ  +   H T+ E + Y        D+    ++   +    +++L    D LVG  G   +S  Q++R+ IA  L+ NP I+ +D  TS LD  + A+V   +  T   G T+V   H+P+
Sbjct:  435 VKILNNLSMVIKPGEMTALVGPSGAGKSTALQLI--HRFYGPTEGMVTVESHDIRSSHIQWLRNQIGIVEQEPVLFFH-TIAEKIRYGREDATMEDLIQAAKE--ANAYNFIMDLPQQFDTLVG-EGGGQMSGGQKQRVAIARALIRNPKILLLDMATSALDNESEAMVQEALSKT-QHGHTIVSVAHRPA 618          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PHNC_ANAVT7.743e-1127.44Phosphonates import ATP-binding protein phnC OS=An... [more]
NODI_RHILV7.743e-1127.42Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RHIL37.743e-1127.42Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_BRAJA7.743e-1128.50Nod factor export ATP-binding protein I OS=Bradyrh... [more]
MNTB_LISMO7.743e-1128.13Manganese transport system ATP-binding protein mnt... [more]
HMUV_RHOP27.743e-1126.92Hemin import ATP-binding protein hmuV OS=Rhodopseu... [more]
CYSA_BACHD7.743e-1127.05Sulfate/thiosulfate import ATP-binding protein cys... [more]
ABCBB_RABIT7.743e-1127.75Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
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