FC931064

Overview
NameFC931064
Unique NameFC931064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15262 contig Ccv1_Contig15262:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y3295_LEPIC (UPF0189 protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_13295 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DGAIHRA GPE+LE CY++ E      C  GEA IT   +L A  +IHTVGPI+ G   N +  L +AYKNSL LAK ++++ IAFP IS G+Y +P E AA IAI +V +F
Sbjct:   21 VNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQG--ECKVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPNISTGIYHFPKERAAKIAIQSVTKF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YMDB_ECOLI (UPF0189 protein ymdB OS=Escherichia coli (strain K12) GN=ymdB PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  ++GGGG DGAIHRAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP++ G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y YP   AA IA+ TV EF
Sbjct:   21 VNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YMDB_ECOL6 (UPF0189 protein ymdB OS=Escherichia coli O6 GN=ymdB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  ++GGGG DGAIHRAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP++ G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y YP   AA IA+ TV EF
Sbjct:   21 VNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YMDB_ECO57 (UPF0189 protein ymdB OS=Escherichia coli O157:H7 GN=ymdB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  ++GGGG DGAIHRAAGP LL+AC +V +      CPTG A IT    LPA  V+HTVGP++ G   N +  L+ AY NSL L  AN+   +AFPAIS G+Y YP   AA IA+ TV EF
Sbjct:   21 VNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD2_HUMAN (MACRO domain-containing protein 2 OS=Homo sapiens GN=MACROD2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAGP LL  C  +        C TG A+IT G+ LPA +VIHTVGPI    IN   +  L + YK+SL L K NNI+ +AFP IS G+Y +P+E AA IA++T+KE+
Sbjct:   88 VNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNG------CDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKEW 208          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YMDB_SALTY (UPF0189 protein ymdB OS=Salmonella typhimurium GN=ymdB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 67/126 (53.17%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  ++GGGG DGAIHRAAGP LL+AC  + +      C TG A ITP  KL A  VIHTVGP++    + EA L   AY+N L LA+AN+ + IAFPAIS G+Y YP  +AA +A+ TV +F
Sbjct:   21 VNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQG--ECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YMDB_SALTI (UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 67/126 (53.17%), Postives = 85/126 (67.46%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  ++GGGG DGAIHRAAGP LL+AC  + +      C TG A ITP  KL A  VIHTVGP++    + EA L   AY+N L LA+AN+ + IAFPAIS G+Y YP  +AA +A+ TV +F
Sbjct:   21 VNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQG--ECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDF 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y3408_LACPL (UPF0189 protein lp_3408 OS=Lactobacillus plantarum GN=lp_3408 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 68/127 (53.54%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 698
            VN+AN  +LGGGG DGAIHRAAGP LL AC   P  G    C TGEA+ITPGF+LPA +VIHT GP++ G   N    L ++Y+NSL+LA  N+ Q +AFP+IS G+Y +P   AA +A+ T++  A
Sbjct:   20 VNAANTSLLGGGGVDGAIHRAAGPALLAACR--PLHG----CATGEAKITPGFRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPSISTGVYHFPLSIAAPLALKTLQATA 140          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD2_MOUSE (MACRO domain-containing protein 2 OS=Mus musculus GN=Macrod2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAGP LL  C  +        C TG A+IT G+ LPA +VIHTVGPI    IN   +  L + Y++SL L K NN++ +AFP IS G+Y +P+E AA IA+ T+KE+
Sbjct:   88 VNAANASLLGGGGVDGCIHRAAGPCLLAECRNLNG------CETGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYQSSLKLVKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKEW 208          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y7730_RHILO (UPF0189 protein mll7730 OS=Rhizobium loti GN=mll7730 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 686
            VN+AN  +LGGGG DGAIHRAAG EL   C  +        C  G+A+IT G+KLPA H+IHTVGP++      EA L  S Y++SL LA AN+ + +AFPAIS G+Y YP +EA  IA+ TV
Sbjct:   24 VNAANTLLLGGGGVDGAIHRAAGRELEVECRMLNG------CKVGDAKITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAISTGVYRYPKDEATGIAVGTV 140          
The following BLAST results are available for this feature:
BLAST of FC931064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
Y3295_LEPIC2.657e-2853.97UPF0189 protein LIC_13295 OS=Leptospira interrogan... [more]
YMDB_ECOLI4.532e-2853.97UPF0189 protein ymdB OS=Escherichia coli (strain K... [more]
YMDB_ECOL64.532e-2853.97UPF0189 protein ymdB OS=Escherichia coli O6 GN=ymd... [more]
YMDB_ECO574.532e-2853.97UPF0189 protein ymdB OS=Escherichia coli O157:H7 G... [more]
MACD2_HUMAN4.532e-2852.76MACRO domain-containing protein 2 OS=Homo sapiens ... [more]
YMDB_SALTY1.010e-2753.17UPF0189 protein ymdB OS=Salmonella typhimurium GN=... [more]
YMDB_SALTI1.010e-2753.17UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB P... [more]
Y3408_LACPL1.010e-2753.54UPF0189 protein lp_3408 OS=Lactobacillus plantarum... [more]
MACD2_MOUSE2.938e-2751.18MACRO domain-containing protein 2 OS=Mus musculus ... [more]
Y7730_RHILO1.904e-2652.85UPF0189 protein mll7730 OS=Rhizobium loti GN=mll77... [more]

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Properties
Property NameValue
Genbank descriptionC34101A07EF PostHarvP1 Citrus clementina cDNA clone C34101A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931064 ID=FC931064; Name=FC931064; organism=Citrus clementina; type=EST; length=708bp
GGAGCTTGATTGATCAGGGATTATGAATGCTTCCTCTACCAAAGGATCTT
TTTGAGAGTGCTTTTGGTAGTGCCTAAAGCGCTTTTAAGTAGCCAAGAGC
CATTGTGTCTATTGGTGTTTTCCTAGAGATCTTTTGACATTAGAAAGTGC
TTTTTGAACAAATAATTTATTGGTGTTTTTGCAAGAAGAACAATTGACTT
GAAAGTACTTTTTTGCAAAATCACTGGCAGCACACCTTACAGTTAATGAT
CGCTTGATTGAATAGGAAGGTTGGTGTTGAAAAGGGAAATTGCAATTGAT
TGAATGGTTGTTTGCTATAGGTTAATTCAGCCAATGAGAAAATGCTTGGA
GGTGGCGGTTGCGATGGAGCTATACATAGGGCTGCAGGACCAGAACTTCT
AGAAGCTTGTTATAGAGTTCCAGAAGTTGGATTTGGAATCCGTTGTCCCA
CAGGAGAAGCAAGAATTACACCAGGTTTTAAATTGCCTGCATCTCATGTG
ATTCACACTGTTGGCCCAATCTATGGTGTTACTATTAACCCTGAAGCTTC
CCTGAGAAGTGCGTACAAGAACAGCTTGAGCTTGGCCAAAGCGAATAACA
TTCAGTACATTGCTTTTCCTGCCATATCGTGTGGCTTATATTGTTATCCT
CATGAGGAAGCCGCCACAATAGCTATATCTACAGTCAAAGAATTTGCTAA
TGACTTTA
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