FC931064

Overview
NameFC931064
Unique NameFC931064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15262 contig Ccv1_Contig15262:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_DANRE (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 51/127 (40.16%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +IHR AGPEL +   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK + +  + F  IS     YP E+A  IA+ TV+ F
Sbjct:   83 VNTSNETLTDKNPISDSIHRHAGPELRDELLKLKG------CRTGEAKMTEGFDLAARFIIHTVGPKYKAKYRTAAESSLYSCYRNVLQLAKEHAMVSVGFCVISTVKRAYPVEDATHIALRTVRRF 203          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y189_TREMD (UPF0189 protein in tap1-dppD intergenic region OS=Treponema medium PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  321 VNSANEKMLG-----GGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYG--VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  M G         D  IH  AG +L   C  + +   G   PTG A+ITP F LP  +V+HTVGPI    +T      L ++Y + L+LA  N ++ IAF  IS G++ +P ++AA IA++TV+++
Sbjct:  103 VNAANSGMTGCWQPCHACIDNCIHTFAGVQLRTVCAGIMQEQ-GHEEPTGTAKITPAFNLPCKYVLHTVGPIISGQLTDRDCTLLANSYTSCLNLAAENGVKSIAFCCISTGVFRFPAQKAAEIAVATVEDW 233          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y508_THEMA (UPF0189 protein TM_0508 OS=Thermotoga maritima GN=TM_0508 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYR-VPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+ANE +  GGG  GAI RA G  + E   R V E G   R PTGEA +T   KL A +VIHTVGP++ G +   +  L  A  N+L  A    ++ I+ PAIS G++ +P E A  I    +++F
Sbjct:  445 VNAANEYLKHGGGVAGAIVRAGGSVIQEESDRIVQERG---RVPTGEAVVTSAGKLKAKYVIHTVGPVWRGGSHGEDELLYKAVYNALLRAHELKLKSISMPAISTGIFGFPKERAVGIFSKAIRDF 568          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +I   AGP+L E   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK  ++  + F  I+     YP E+A  IA+ TV+ F
Sbjct:   72 VNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKG------CRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRF 192          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +I   AGP+L E   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK  ++  + F  I+     YP E+A  IA+ TV+ F
Sbjct:   72 VNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKG------CRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRF 192          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_MACFA (Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +I   AGP+L E   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK  ++  + F  I+     YP E+A  IA+ TV+ F
Sbjct:   36 VNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKG------CRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRF 156          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +I   AGP+L E   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK  ++  + F  I+     YP E+A  IA+ TV+ F
Sbjct:   72 VNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLKG------CRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRF 192          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: GDAP2_BOVIN (Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN++NE +        +I   AGP+L E   ++        C TGEA++T GF L A  +IHTVGP Y        E+SL S Y+N L LAK  ++  + F  I+     YP E+A  IA+ TV+ F
Sbjct:   72 VNTSNESLTDKNPVSESIFMLAGPDLKEDLQKLRG------CRTGEAKLTKGFNLAARFIIHTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSMSSVGFCVINSAKRGYPLEDATHIALRTVRRF 192          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y919_STRP6 (UPF0189 protein M6_Spy0919 OS=Streptococcus pyogenes serotype M6 GN=M6_Spy0919 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  321 VNSANEKMLG----GGGC-DGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGP--IYGVTINPEAS--LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 686
            VN+AN ++LG      GC D AIH  AG  L  AC  +     G +   G+A++T  + LPAS++IHTVGP    G  ++P  +  L   Y++SL LA    +  +AF +IS G + +P +EAA IAI TV
Sbjct:  102 VNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ-GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGRHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y856_STRP3 (UPF0189 protein SpyM3_0856/SPs1056 OS=Streptococcus pyogenes serotype M3 GN=SpyM3_0856 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  321 VNSANEKMLG----GGGC-DGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGP--IYGVTINPEAS--LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 686
            VN+AN ++LG      GC D AIH  AG  L  AC  +     G +   G+A++T  + LPAS++IHTVGP    G  ++P  +  L   Y++SL LA    +  +AF +IS G + +P +EAA IAI TV
Sbjct:  102 VNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQ-GRKEAIGQAKLTSAYHLPASYIIHTVGPRITKGHHVSPIRADLLARCYRSSLDLAVKAGLTSLAFCSISTGEFGFPKKEAAQIAIKTV 231          
The following BLAST results are available for this feature:
BLAST of FC931064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GDAP2_DANRE1.512e-1540.16Ganglioside-induced differentiation-associated pro... [more]
Y189_TREMD2.580e-1538.64UPF0189 protein in tap1-dppD intergenic region OS=... [more]
Y508_THEMA1.280e-1441.73UPF0189 protein TM_0508 OS=Thermotoga maritima GN=... [more]
GDAP2_RAT6.354e-1437.80Ganglioside-induced differentiation-associated-pro... [more]
GDAP2_MOUSE6.354e-1437.80Ganglioside-induced differentiation-associated pro... [more]
GDAP2_MACFA6.354e-1437.80Ganglioside-induced differentiation-associated pro... [more]
GDAP2_HUMAN6.354e-1437.80Ganglioside-induced differentiation-associated pro... [more]
GDAP2_BOVIN8.298e-1437.80Ganglioside-induced differentiation-associated pro... [more]
Y919_STRP61.849e-1340.46UPF0189 protein M6_Spy0919 OS=Streptococcus pyogen... [more]
Y856_STRP31.849e-1340.46UPF0189 protein SpyM3_0856/SPs1056 OS=Streptococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34101A07EF PostHarvP1 Citrus clementina cDNA clone C34101A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931064 ID=FC931064; Name=FC931064; organism=Citrus clementina; type=EST; length=708bp
GGAGCTTGATTGATCAGGGATTATGAATGCTTCCTCTACCAAAGGATCTT
TTTGAGAGTGCTTTTGGTAGTGCCTAAAGCGCTTTTAAGTAGCCAAGAGC
CATTGTGTCTATTGGTGTTTTCCTAGAGATCTTTTGACATTAGAAAGTGC
TTTTTGAACAAATAATTTATTGGTGTTTTTGCAAGAAGAACAATTGACTT
GAAAGTACTTTTTTGCAAAATCACTGGCAGCACACCTTACAGTTAATGAT
CGCTTGATTGAATAGGAAGGTTGGTGTTGAAAAGGGAAATTGCAATTGAT
TGAATGGTTGTTTGCTATAGGTTAATTCAGCCAATGAGAAAATGCTTGGA
GGTGGCGGTTGCGATGGAGCTATACATAGGGCTGCAGGACCAGAACTTCT
AGAAGCTTGTTATAGAGTTCCAGAAGTTGGATTTGGAATCCGTTGTCCCA
CAGGAGAAGCAAGAATTACACCAGGTTTTAAATTGCCTGCATCTCATGTG
ATTCACACTGTTGGCCCAATCTATGGTGTTACTATTAACCCTGAAGCTTC
CCTGAGAAGTGCGTACAAGAACAGCTTGAGCTTGGCCAAAGCGAATAACA
TTCAGTACATTGCTTTTCCTGCCATATCGTGTGGCTTATATTGTTATCCT
CATGAGGAAGCCGCCACAATAGCTATATCTACAGTCAAAGAATTTGCTAA
TGACTTTA
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