FC931064

Overview
NameFC931064
Unique NameFC931064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15262 contig Ccv1_Contig15262:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: POLN_RUBVC (Non-structural polyprotein p200 OS=Rubella virus (strain BRDII) PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 44/127 (34.65%), Postives = 62/127 (48.82%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY----GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK 689
            VN+ANE +L G G  GAI  +A   L E C R+        CPTGEA  TPG     +H+IH V P            EA L  AY++ ++LA A     +A P +  G+Y +   E+   A++  +
Sbjct:  837 VNAANEGLLAGSGVCGAIFASAAASLAEDCRRLAP------CPTGEAVATPGHGCGYAHIIHAVAPRRPQDPAALEQSEALLERAYRSIVALAAARRWTCVACPLLGAGIYGWSAAESLRAALAAAR 957          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y396_STAAC (UPF0189 protein SACOL0396 OS=Staphylococcus aureus (strain COL) GN=SACOL0396 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 3
Query:  321 VNSANEKMLG----GGGC-DGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYG---VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND 704
            VN+AN + LG       C D  IH  AG ++   C  +     G     G+A+IT G+ L A ++IHTVGP      V+   +  L   Y + L LA  +++ ++AF  IS G++ +P +EAA IA+ TV+ +  +
Sbjct:  103 VNAANSRFLGCMQANHDCIDNIIHTKAGVQVRLDCAEIIRQQ-GRNEGVGKAKITRGYNLSAKYIIHTVGPQIRRLPVSKMNQDLLAKCYLSCLKLADQHSLNHVAFCCISTGVFAFPQDEAAEIAVRTVESYLKE 237          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: POLN_RUBVB (Non-structural polyprotein p200 OS=Rubella virus (strain BRD1) PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 44/127 (34.65%), Postives = 62/127 (48.82%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY----GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK 689
            VN+ANE +L G G  GAI  +A   L E C R+        CPTGEA  TPG     +H+IH V P            EA L  AY++ ++LA A     +A P +  G+Y +   E+   A++  +
Sbjct:  837 VNAANEGLLAGSGVCGAIFASAAATLAEDCRRLAP------CPTGEAVATPGHGCGYTHIIHAVAPRRPQDPAALEQSEALLERAYRSVVALAAARRWACVACPLLGAGIYGWSAAESLRAALAAAR 957          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: PAR14_HUMAN (Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS--LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 692
            VN++NE +   GG   A+ +AAGPEL   C ++  V    R   G A I+   KLP  HVIH VGP +     P     LR A + SL LA+    + IA PAIS G++ +P        +S +KE
Sbjct:  739 VNASNEDLKHYGGLAAALSKAAGPELQADCDQI--VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKE 862          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y2899_SULSO (UPF0189 protein SSO2899 OS=Sulfolobus solfataricus GN=SSO2899 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 51/126 (40.48%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELL-EACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +  GGG   AI R  G  +  E+   V + G     P GE  +T   KL A +VIH VGP YG  I  E  L SA   SL  A   ++  IA PAIS G+Y YP E  A I  + +K +
Sbjct:   26 VNAANSYLQHGGGVAYAIVRKGGYIIQKESDEYVKKFG---PVPVGEVAVTSAGKLKAKYVIHAVGPRYG--IEGEDKLESAIFKSLLKADELSLSSIAMPAISTGIYGYPFEICARIMANVLKGY 146          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: POLN_RUBVD (Non-structural polyprotein p200 OS=Rubella virus (strain Cendehill) PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 44/127 (34.65%), Postives = 61/127 (48.03%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY----GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK 689
            VN+ANE +L G G  GAI   A   L   C R+        CPTGEA  TPG     +H+IH V P            EA L  AY++ ++LA A    Y+A P +  G+Y +   E+   A++  +
Sbjct:  837 VNAANEGLLAGSGVCGAIFANATAALAADCRRLAP------CPTGEAVATPGHGCGYTHIIHAVAPRRPRDPAALEEGEALLERAYRSIVALAAARRWAYVACPLLGAGVYGWSAAESLRAALAATR 957          
The following BLAST results are available for this feature:
BLAST of FC931064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
POLN_RUBVC1.325e-1134.65Non-structural polyprotein p200 OS=Rubella virus (... [more]
Y396_STAAC1.730e-1133.82UPF0189 protein SACOL0396 OS=Staphylococcus aureus... [more]
POLN_RUBVB1.730e-1134.65Non-structural polyprotein p200 OS=Rubella virus (... [more]
PAR14_HUMAN2.260e-1138.10Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN... [more]
Y2899_SULSO5.034e-1140.48UPF0189 protein SSO2899 OS=Sulfolobus solfataricus... [more]
POLN_RUBVD5.034e-1134.65Non-structural polyprotein p200 OS=Rubella virus (... [more]

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Properties
Property NameValue
Genbank descriptionC34101A07EF PostHarvP1 Citrus clementina cDNA clone C34101A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931064 ID=FC931064; Name=FC931064; organism=Citrus clementina; type=EST; length=708bp
GGAGCTTGATTGATCAGGGATTATGAATGCTTCCTCTACCAAAGGATCTT
TTTGAGAGTGCTTTTGGTAGTGCCTAAAGCGCTTTTAAGTAGCCAAGAGC
CATTGTGTCTATTGGTGTTTTCCTAGAGATCTTTTGACATTAGAAAGTGC
TTTTTGAACAAATAATTTATTGGTGTTTTTGCAAGAAGAACAATTGACTT
GAAAGTACTTTTTTGCAAAATCACTGGCAGCACACCTTACAGTTAATGAT
CGCTTGATTGAATAGGAAGGTTGGTGTTGAAAAGGGAAATTGCAATTGAT
TGAATGGTTGTTTGCTATAGGTTAATTCAGCCAATGAGAAAATGCTTGGA
GGTGGCGGTTGCGATGGAGCTATACATAGGGCTGCAGGACCAGAACTTCT
AGAAGCTTGTTATAGAGTTCCAGAAGTTGGATTTGGAATCCGTTGTCCCA
CAGGAGAAGCAAGAATTACACCAGGTTTTAAATTGCCTGCATCTCATGTG
ATTCACACTGTTGGCCCAATCTATGGTGTTACTATTAACCCTGAAGCTTC
CCTGAGAAGTGCGTACAAGAACAGCTTGAGCTTGGCCAAAGCGAATAACA
TTCAGTACATTGCTTTTCCTGCCATATCGTGTGGCTTATATTGTTATCCT
CATGAGGAAGCCGCCACAATAGCTATATCTACAGTCAAAGAATTTGCTAA
TGACTTTA
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