FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANCB (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain B100) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANC8 (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANC5 (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANAC (S-adenosylmethionine synthetase OS=Xanthomonas axonopodis pv. citri GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA L QD  ++VACET  KT + +V GEITT A +D E + R     IG+ S+DVG D   C VL  I +QSP IAQGV     K+PEE+G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVITDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVD---RKKPEEMG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ROSCS (S-adenosylmethionine synthetase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  217 FTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEIT-TKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPE 549
            FTSESV EGHPDK+CD+VSDAVLDA L+ DP ++VACET T T +++V GE+T  +  +  E+IVR T + IG+T A  G DAD C V+V I  QSPDIAQGV+  L  R +
Sbjct:   13 FTSESVTEGHPDKICDQVSDAVLDAFLSHDPRARVACETATTTGLIVVIGEVTYEQGYIPIEEIVRKTIKDIGYTDAAYGFDADTCGVMVAIHGQSPDIAQGVNRALEVRSD 124          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDA+LDA LAQD  ++VA ET   T +V++ GEITT ANVDY  + R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAETLCNTGLVVLAGEITTSANVDYIHVARETIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_MYCCT (S-adenosylmethionine synthetase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 58/107 (54.21%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +E  LFTSESV+EGHPDK+CD++SDA+LD  L QD ++KVACE  T TN +++ G+I++ A VDYE++ RD  + IG+     G++A+ CK+ + IE QSPDIAQGV
Sbjct:    5 IEKRLFTSESVSEGHPDKICDQISDAILDEVLKQDKNAKVACEVFTTTNYLLIGGQISSTAIVDYEQVARDVLKKIGYVDDAYGINANTCKIDIKIESQSPDIAQGV 111          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_LACS1 (S-adenosylmethionine synthetase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHL 534
            E  LFTSESV+EGHPDK+ D++SD++LDA L QDP+++VA ET   T +V+V GE++T A++D +K+VR+T + IG+ +   G D D+C V+  I++QSPDIA GV   L
Sbjct:    3 EKHLFTSESVSEGHPDKIADQISDSILDAMLEQDPEARVAVETTVTTGLVVVVGEVSTTAHIDIQKVVRETIKEIGYKNGKYGFDGDNCAVITAIDEQSPDIALGVDNSL 112          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_JANMA (S-adenosylmethionine synthetase OS=Janthinobacterium sp. (strain Marseille) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA   QDP ++VA ET   T +V++ GEITT ANVDY ++ R T + IG+ +AD G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARQTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGV 108          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_XANCB7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANC87.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANC57.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]
METK_XANAC7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas axo... [more]
METK_STRMK7.523e-2955.46S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_ROSCS7.523e-2957.14S-adenosylmethionine synthetase OS=Roseiflexus cas... [more]
METK_RALSO7.523e-2958.65S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_MYCCT7.523e-2954.21S-adenosylmethionine synthetase OS=Mycoplasma capr... [more]
METK_LACS17.523e-2951.82S-adenosylmethionine synthetase OS=Lactobacillus s... [more]
METK_JANMA7.523e-2957.69S-adenosylmethionine synthetase OS=Janthinobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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