FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_RALME (S-adenosylmethionine synthetase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + + G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAVLDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_NITOC (S-adenosylmethionine synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  217 FTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHL 534
            FTSESV+EGHPDK+ D++SD +LDA LAQD  ++VACET  KT MV+V GEITT+A++DYE+I+R+T   IG+  +++G D   C V+  I +QS DIAQGV   L
Sbjct:    7 FTSESVSEGHPDKVADQISDVILDAILAQDRRARVACETLVKTGMVLVAGEITTQAHIDYEQIIRETITEIGYNHSEIGFDGATCAVVNAIGKQSSDIAQGVDREL 112          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_MAGSM (S-adenosylmethionine synthetase OS=Magnetococcus sp. (strain MC-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSAD-VGLDADHCKVLVNIEQQSPDIAQGVH 525
            +LF+SESV+EGHPDK+ D++SDA+LDA LAQDP S+VACET   T    + GEITTKA +DY+KI R+T  +IG+TSAD +G   D   + V +++QS DIAQGV+
Sbjct:    5 YLFSSESVSEGHPDKMADQISDAILDALLAQDPLSRVACETMVSTGFCTIAGEITTKAVIDYQKIARETINAIGYTSADTMGYSGDTAAIFVALDKQSVDIAQGVN 110          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_DIAST (S-adenosylmethionine synthetase OS=Diaphorobacter sp. (strain TPSY) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDA+LDA   QDP S+VA ET T T +V++ GEITT A+VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_DESMR (S-adenosylmethionine synthetase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            +LF+SESV EGHPDK+ D++SD +LDA LAQDPD+ VACET   T +  + GEITTKA  D+  IVR+T + IG+ S+ +G D + C V+ ++++QS DIAQGV      +PE+ G
Sbjct:    8 YLFSSESVTEGHPDKVADQISDGILDAILAQDPDAHVACETLVTTGLAFIAGEITTKAYADFPSIVRETVKEIGYNSSTMGFDWETCAVISSVDKQSVDIAQGVS---RTKPEDQG 120          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BDEBA (S-adenosylmethionine synthetase OS=Bdellovibrio bacteriovorus GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M+ +LFTSESV+EGHPDK+ D++SD +LDA LAQDP  +VACET   T +V+V GEITT A V++ ++ RD  + IG+  +D G D   C V++ + QQSPDIA GV
Sbjct:    1 MKNYLFTSESVSEGHPDKMADQISDGILDAILAQDPKGRVACETLLTTGLVVVAGEITTSAKVNFSEVARDVVKRIGYDHSDKGFDYKTCGVMIAVGQQSPDIAVGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK 540
            +FTSESV+EGHPDK+ D++SDA+LDA LA+DP ++VACET  KT MV+V GEITT A VD E I R+  + IG+ S+D+G D   C VL  I +QS DIAQGV    TK
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK 113          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ACIAC (S-adenosylmethionine synthetase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDA+LDA   +DP S+VA ET T T +V++ GEITT A+VDY ++ RDT + IG+ + D G+D   C VLV  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFREDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSNDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_TRIEI (S-adenosylmethionine synthetase OS=Trichodesmium erythraeum (strain IMS101) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV EGHPDK+CD++SD ++DA LAQDP S+VA E    T +V++ GEITTKA V+Y ++ R     IG+  A+ G  AD C VLV +++QS DIAQGV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTIIDAILAQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYIELARKKIADIGYVHAENGFSADSCSVLVALDEQSADIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_STRS7 (S-adenosylmethionine synthetase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=metK PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 63/113 (55.75%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            E  LFTSESV+EGHPDK+ D++SDA+LDA LA+DP++ VA ETC  T  V VFGEI+T A VD  ++VRDT   IG+T A+ G  A+   V  ++ +QSPDIAQGV+  L  R
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAKDPEAHVAAETCVYTGSVHVFGEISTTAYVDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSPDIAQGVNEALEAR 115          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_RALME1.283e-2858.65S-adenosylmethionine synthetase OS=Ralstonia metal... [more]
METK_NITOC1.283e-2856.60S-adenosylmethionine synthetase OS=Nitrosococcus o... [more]
METK_MAGSM1.283e-2857.55S-adenosylmethionine synthetase OS=Magnetococcus s... [more]
METK_DIAST1.283e-2857.69S-adenosylmethionine synthetase OS=Diaphorobacter ... [more]
METK_DESMR1.283e-2851.72S-adenosylmethionine synthetase OS=Desulfovibrio m... [more]
METK_BDEBA1.283e-2854.21S-adenosylmethionine synthetase OS=Bdellovibrio ba... [more]
METK_AMOPS1.283e-2858.72S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_ACIAC1.283e-2857.69S-adenosylmethionine synthetase OS=Acidovorax aven... [more]
METK_TRIEI1.676e-2855.77S-adenosylmethionine synthetase OS=Trichodesmium e... [more]
METK_STRS71.676e-2855.75S-adenosylmethionine synthetase OS=Streptococcus e... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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