FC931083

Overview
NameFC931083
Unique NameFC931083
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig805 contig Ccv1_Contig805:190..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 76/246 (30.89%), Postives = 115/246 (46.75%), Query Frame = 1
Query:    1 LILSWIITLYTLWQMVEMH---EMVPGKRFDRYHELG---QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC------KEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKT------------AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK 666
            L+   IIT YT   + + +   + + G R   Y+ +G    +  G+K+ L  V   Q +  VGV I Y +T   SL  + +  C      K  C      Y +  F  V  +LS LPNF+ ++ +S+ AAVMS SY++I    ++       VA G   KT            A+  V+  F A+GD+AF+YA   +++EIQ T+ S+P  P    M R  +V      + Y     IGY  FGN+
Sbjct:   67 LVAFAIITYYTSTLLADCYRSPDSITGTR--NYNYMGVVRSYLGGKKVQLCGVA--QYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPY-MAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIAT-----VASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSP--PENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQ 300          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 69/237 (29.11%), Postives = 112/237 (47.26%), Query Frame = 1
Query:    1 LILSWIITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC---KEPCKEIKLSYF--IMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVR--------KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            L++   IT +T   + + +   + V GKR   Y ++ +   G +      V Q   + +GV + Y +T   SL  V +  C   K    +  +S +  + +F  +  +LS +PNF+ ++ +S+ AAVMS +Y+TI    ++         K      A G    TAA  ++  F A+GD+AFAYA   V++EIQ T+ S+P +     M R  +V        Y     IGY  FGN
Sbjct:   76 LLIFSFITYFTSTMLADCYRAPDPVTGKRNYTYMDVVRSYLGGRKVQLCGVAQYGNL-IGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMTGTAVGVDV-TAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAE--NKAMKRASLVGVSTTTFFYILCGCIGYAAFGN 308          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14
Identity = 66/232 (28.45%), Postives = 109/232 (46.98%), Query Frame = 1
Query:   19 ITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC-KEPCKEIKLSY----FIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKG---------VQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            IT +T   + + +   + V GKR   Y E+ +   G +      + Q   + +G+ I Y +T   S+  V    C  +    +K +     F++IFA +  +LS +PNF++++ +S+ AAVMS  Y++I    S+ K              V  G    + A  ++  F A+GD+AFAYA   V++EIQ T+ + P   +K  M R  +V        Y     +GY  FGN
Sbjct:   78 ITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCGLAQYGNL-IGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDV-SGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKA-MKRASLVGVSTTTFFYMLCGCVGYAAFGN 306          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 65/236 (27.54%), Postives = 107/236 (45.34%), Query Frame = 1
Query:    1 LILSWIITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC------KEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTV------FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            ++L  ++TLY+   + + +   + V GKR   Y +  +   G      I    Q +   G+ I Y +    S+  +    C      K+PC      Y I +F     +LS +P+F+ I  +S+ AAVMS +YS I  +  + +     V  G     + GTV      +  F ALGD+AFAY+   V++EIQ T+ S P +     M +   ++  V  + Y     +GY  FG+
Sbjct:   85 MLLFSLVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGG-FKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMI-VFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESK--TMKKATKISIAVTTIFYMLCGSMGYAAFGD 316          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 65/243 (26.75%), Postives = 109/243 (44.86%), Query Frame = 1
Query:    1 LILSWIITLYT---LWQMVEMHEMVPGKRFDRYHE-LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE------PCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTV------------FNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            ++L   +T YT   L       + V GKR   Y + +  +  G K+ +  VV  Q +   G  I Y +    SL  +    C++      PC  +  + +++ F  V  + S +P+F+ +  +S+ AAVMS +YS I     V K V+     G       GTV            +  F +LG++AFAY+   +++EIQ T+ S P + +   M +   V+  V  + Y     +GY  FG+
Sbjct:   67 MLLFSFVTFYTSTLLCSCYRSGDSVTGKRNYTYMDAIHSNLGGIKVKVCGVV--QYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPC-HVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVN--TMRKATFVSVAVTTVFYMLCGCVGYAAFGD 304          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.876e-12
Identity = 59/215 (27.44%), Postives = 104/215 (48.37%), Query Frame = 1
Query:   64 VPGKRFDRYHE-LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC------KEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVR--------KGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            + GKR   Y + +  +  G K+ L  +V  Q +   GV I Y +    S+  +    C      K+PC  +  + +++ F  V  + S +P+F+ +  +S+ AAVMS +YS+   +  +         KG    ++ G  A T    ++  F ALGD+AFAY+   +++EIQ T+ S P +  +  M +  +V+  V  + Y     +GY  FG+
Sbjct:   93 ISGKRNYTYMDAVRSNLGGVKVTLCGIV--QYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPC-HMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLTGISIG--AVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSE--EKTMKKATLVSVSVTTMFYMLCGCMGYAAFGD 300          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  262 SYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSASVRKGVQ----PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 663
            +YF+++F      +S +PNF+++  +SL AA+MS +YS I    ++ K ++         G  A+     V+  F ALG++AF+Y    ++LEIQ T+ S P +  K  M +   VA  +    +F     GY  FG+
Sbjct:  162 NYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAE--KQTMKKASTVAVFIQTFFFFCCGCFGYAAFGD 297          
BLAST of FC931083 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.180e-11
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  169 GVCIVYMVTGGKSLHKV------HELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNSIAGVSLAAAVMSLSYSTIAWSAS--------VRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK 666
            G+ + Y +    S+  +      HE   K PC      Y IM F     +LS + +F+ I  +S+ AA+MS +YS I  +          V KG    ++ G  A T    ++  F ALGD+AFAY+   V++EIQ T+ S P +     +   + +A  V    Y     +GY  FG+K
Sbjct:  116 GITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSSNPYMIM-FGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLTGISIG--AVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIA--VTTTFYMLCGCMGYAAFGDK 290          
The following BLAST results are available for this feature:
BLAST of FC931083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AAP8_ARATH9.552e-1630.89Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH2.353e-1429.11Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP6_ARATH3.073e-1428.45Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH1.992e-1327.54Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH3.397e-1326.75Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH2.876e-1227.44Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP7_ARATH1.427e-1131.16Probable amino acid permease 7 OS=Arabidopsis thal... [more]
AAP4_ARATH3.180e-1130.00Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]

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Properties
Property NameValue
Genbank descriptionC34101C03EF PostHarvP1 Citrus clementina cDNA clone C34101C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931083 ID=FC931083; Name=FC931083; organism=Citrus clementina; type=EST; length=739bp
CTGATATTGTCGTGGATCATCACTCTGTACACCTTGTGGCAAATGGTTGA
GATGCACGAGATGGTGCCGGGAAAACGGTTTGACAGATACCATGAACTGG
GGCAGCATGCTTTTGGTGAAAAACTTGGTCTCTATATCGTGGTGCCACAA
CAGCTTATTGTTGAAGTCGGTGTGTGCATTGTCTATATGGTTACGGGAGG
CAAATCACTGCATAAGGTCCATGAACTTTTATGCAAAGAACCATGCAAAG
AAATAAAACTTAGTTACTTCATCATGATCTTTGCCTCTGTTCACTTTGTA
CTCTCCCATCTCCCCAACTTCAATTCCATTGCCGGTGTCTCTTTGGCAGC
TGCAGTTATGTCCTTGAGTTACTCTACAATTGCTTGGTCAGCTTCAGTCC
GCAAGGGTGTTCAGCCAGATGTGGCGTATGGATACAAAGCTAAGACTGCA
GCAGGGACAGTCTTTAACTTCTTTAGTGCCTTGGGTGATGTGGCTTTTGC
ATATGCCGGGCACAATGTTGTCTTGGAGATCCAAGCAACAATCCCATCTA
CACCCGAGAAGCCATCCAAGGGGCCTATGTGGAGAGGAGTTGTTGTTGCC
TATATAGTCGTTGCATTGTGCTACTTCCCTGTTGCACTCATTGGATATTG
GATGTTTGGCAATAAGTTGAAGATAACATCCTCCTTTCCTTTGGAAAACC
ACATGGCTTATTGTATGGCTAACTTTCTTTGTGTGTCAT
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