FC931090

Overview
NameFC931090
Unique NameFC931090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15271 contig Ccv1_Contig15271:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THLA_STAA3 (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0355 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  324 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISV 695
            VV+ AAYRT I     G FKD  A DL A +++ +I++T LNPSE+ ++++G VL  G  +    R+AA   G PETVP  TVN+ C SGL+++     +I  G  DI +A G+E+M+ + + V
Sbjct:    4 VVLAAAYRTPI-GVFGGAFKDVPAYDLGATLIEHIIKETGLNPSEIDEVIIGNVLQAGQGQN-PARIAAMKGGLPETVPAFTVNKVCGSGLKSIQLAYQSIVTGENDIVLAGGMENMSQSPMLV 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            +DVV+V A RT I +A RG  +    D+L+   ++ +IEKT ++P  + ++++G  L+      +  RM    AG P   P+  +NR C SGL++V  +A  I++G  +IG+A G ESMT
Sbjct:    5 EDVVVVGALRTPIGRATRGKLRSLRNDELVTAAIRGIIEKTGIDPRLIEEVILGHCLSSMEGN-VAARMGVLRAGVPVETPVMIINRLCGSGLESVGLIAEKIRSGRIEIGLAGGFESMT 123          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_CHRVO (Acetyl-CoA acetyltransferase OS=Chromobacterium violaceum GN=phaA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 683
            +V IVAA RTAI  +  GG     A +L A V+KA++EKT + P +V ++++G VL  GS +    R A   AG P T P  T+N  C SGL+AV   A AI AG  DI IA G ESM+++
Sbjct:    2 EVAIVAAQRTAI-GSFGGGLAKIPAPELGATVIKALLEKTGVKPEDVSEVILGQVLTAGSGQN-PARQALIKAGLPVTTPATTLNVVCGSGLRAVHLAAQAILAGDADIVIAGGQESMSLS 120          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            D+V+V A RTA+ KAK G F++  A++L A V++A+ ++   L P+EV D++ G V           R AA   G P TVP +TVNR C S + A+      IKAG+ D  I  G+E M
Sbjct:    7 DIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCVNQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            DVVIV+A RTA+ K   G      A +L A V+KA +E+  + P +V ++++G VL  GS +    R AA  AG P  VP  T+N+ C SGL+AV   A AI AG  +I +A G E+M+
Sbjct:    3 DVVIVSAARTAVGKFG-GSLAKIPAPELGAVVIKAALERAGVKPEQVSEVIMGQVLTAGSGQN-PARQAAIKAGLPAMVPAMTINKVCGSGLKAVMLAANAIMAGDAEIVVAGGQENMS 119          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THLA_STAES (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2384 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  324 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            +V+  AYRT I     G FKD  A +L A V++ ++E ++++P+E+ ++++G VL  G  +    R+AA + G PE VP  TVN+ C SGL+A+     +I AG  +I IA G+ESM+
Sbjct:    4 IVLAEAYRTPI-GVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQN-PARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMS 119          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THLA_STAEQ (Probable acetyl-CoA acyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0032 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  324 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            +V+  AYRT I     G FKD  A +L A V++ ++E ++++P+E+ ++++G VL  G  +    R+AA + G PE VP  TVN+ C SGL+A+     +I AG  +I IA G+ESM+
Sbjct:    4 IVLAEAYRTPI-GVFGGVFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAGQGQN-PARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMS 119          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THLA_CLOAB (Acetyl-CoA acetyltransferase OS=Clostridium acetobutylicum GN=thlA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            +VVI +A RTAI    +   KD  A DL A  +K  ++K  + P +V ++++G VL  G  +    R A+F AG P  +P  T+N+ C SGL+ V+  A  IKAG  D+ IA G+E+M+
Sbjct:    3 EVVIASAVRTAIGSYGKS-LKDVPAVDLGATAIKEAVKKAGIKPEDVNEVILGNVLQAGLGQN-PARQASFKAGLPVEIPAMTINKVCGSGLRTVSLAAQIIKAGDADVIIAGGMENMS 119          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQLT 710
            + VIV+  RT + KAK+G       DDL A  +K  +++       + D+++G             R     AG P TVP  TVNR CSSGLQ++A  A  I  G YD  IA G ESM  + + ++G +T
Sbjct:    3 EAVIVSGARTPVGKAKKGSLATVRPDDLGAICVKETLKRAGGYEGNIDDLIIGCATPEAEQGLNMARNIGALAGLPYTVPAITVNRYCSSGLQSIAYAAEKIMLGAYDTAIAGGAESM--SQVPMMGHVT 130          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 686
            D +VIV A RTAI     GG    L A D+   VLKA+IE+T + P +V ++++G VL  G  +    R     AG P TVP  T+N+ C SGL+AV     A+  G  +I IA G ESM+ +S
Sbjct:    3 DTIVIVDAGRTAI--GTFGGALSALQATDIGTTVLKALIERTGIAPEQVSEVILGQVLTAGCGQN-PARQTTLMAGLPHTVPAMTINKVCGSGLKAVHLAMQAVACGDAEIVIAGGQESMSQSS 123          
The following BLAST results are available for this feature:
BLAST of FC931090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
THLA_STAA33.082e-1741.94Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THIK_ENCCU1.998e-1636.673-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
THIL_CHRVO5.812e-1645.45Acetyl-CoA acetyltransferase OS=Chromobacterium vi... [more]
FADA_CHRSD7.591e-1640.343-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
THIL_RALEH2.209e-1542.86Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
THLA_STAES3.767e-1539.83Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAEQ3.767e-1539.83Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_CLOAB1.096e-1439.50Acetyl-CoA acetyltransferase OS=Clostridium acetob... [more]
FADA_BACSU1.432e-1436.153-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
THIL_THIVI3.189e-1441.94Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]

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Properties
Property NameValue
Genbank descriptionC34101C11EF PostHarvP1 Citrus clementina cDNA clone C34101C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931090 ID=FC931090; Name=FC931090; organism=Citrus clementina; type=EST; length=757bp
GAGTGTCCTATAATTTCCCAAGTATATTTCAGGGGGCCAAAAAAAAAAAA
AAAAAAAAAAACAGGTACTATAACTTCNGGAGTAGATTCAAACCAGGAAA
GAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTT
CCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGA
ATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCC
GGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATA
GGAAGCCTGCTTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACT
GCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGA
TCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATC
CCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCA
ACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGA
AACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGG
CGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGT
ATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGG
CCAGTTAACCCCCAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCT
TCCTATG
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