FC931090

Overview
NameFC931090
Unique NameFC931090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15271 contig Ccv1_Contig15271:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            +VVIV   RT + ++K G F+ T A+DL A ++K ++++   ++P+++ DI  G V           R +A  AG P+++   TVNR C S +QA+ D + AI  G  +I I  G+E M
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  372 GGFKDTLADDLLA-PVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            G      ADDL A P+ + ++   RL+   + D+++G     G       RMA   AG P++V   T+NR C SGL A+   A AIKAG  D+ IA G+ESM+
Sbjct:   19 GALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMS 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  324 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 680
            +VI +A RTA+  +  G F +TLA +L A  +KAV+E+  +   EV ++++G VL P        R AA  AG P+      +N+ C SGL+AVA     I  G   + +A G+ESM++
Sbjct:    6 IVIASAARTAV-GSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVL-PAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSM 122          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPS----EVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            DV I  A RT I +   G      ADDL A  LKA+IE    NP+    +V ++  G     G       RMA   AG PE++P  T+NR C+SG+ A+     AI +G  ++ IA G+ESM+
Sbjct:    3 DVFICDAIRTPIGRFG-GALAGVRADDLAAVPLKALIEP---NPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMS 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            + VVIV A RT + ++K G F+   A+DL A ++++++ +   L+  E+ DI  G V           R AA  A  P  VP  TVNR C S +QA+ D A  I  G  D+ +  G+E M
Sbjct:    2 EKVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNAALDAREIDDIYWGCVQQTLEQGFNVARNAALLAEIPMNVPATTVNRLCGSSMQALHDAARTIMVGDADVCLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIAD (3-ketoacyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     A  P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIVLLADLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            +V I  A RT I +   G      ADDL A  LKA++E+   ++ S + ++ +G     G       RMA   AG PE+VP  T+NR C+SG+ A+     AI  G  ++ IA G+ESM+
Sbjct:    4 EVFICDAVRTPIGRFG-GSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMS 122          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_RAT (Acetyl-CoA acetyltransferase, mitochondrial OS=Rattus norvegicus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  294 YHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADD----LLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            Y  KP  +D VVIV+A RT I     G F  +LA      L    ++  IEK  +   EV ++ +G V+  G  +A   R A   AG P   P  TVN+ C+SG++A+   + ++  G  D+ +A G+ESM+
Sbjct:   30 YASKPTLND-VVIVSATRTPI-----GSFLGSLASQPATKLGTIAIQGAIEKAGIPKEEVKEVYMGNVIQGGEGQA-PTRQATLGAGLPIATPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 154          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_MOUSE (Acetyl-CoA acetyltransferase, mitochondrial OS=Mus musculus GN=Acat1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 3
Query:  294 YHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADD----LLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            Y  KP  ++ VVIV+A RT I     G F  +LA      L    ++  IEK  +   EV ++ +G V+  G  +A   R A   AG P + P  TVN+ C+SG++A+   + ++  G  D+ +A G+ESM+
Sbjct:   30 YASKPTLNE-VVIVSAIRTPI-----GSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVKEVYMGNVIQGGEGQA-PTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 154          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_DANRE (Acetyl-CoA acetyltransferase, mitochondrial OS=Danio rerio GN=acat1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  294 YHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            Y  +P+ ++ VVIV+A RT I     G FK +L    A  L +  +K  I+K  +   EV ++ +G VL  G  +A   R A   AG P + P  T+N+ C+SG++++   + ++  G  D+ +A G+ESM+
Sbjct:   26 YSTRPSLNE-VVIVSAVRTPI-----GSFKGSLSTLPATKLGSIAIKGAIDKAGIPVEEVKEVYMGNVLQAGEGQA-PTRQALLGAGLPLSTPATTINKVCASGMKSIMLASQSLMCGHQDVMVAGGMESMS 150          
The following BLAST results are available for this feature:
BLAST of FC931090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FADA_VIBFM1.481e-1135.293-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
PAAJ_ECOLX1.935e-1138.83Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
THIL_RHIME3.300e-1136.97Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
PCAF_PSEPU3.300e-1138.21Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
FADA_PECCP3.300e-1135.833-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_ACIAD4.310e-1135.593-ketoacyl-CoA thiolase OS=Acinetobacter sp. (stra... [more]
PCAF_PSEAE7.352e-1136.67Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
THIL_RAT9.603e-1134.85Acetyl-CoA acetyltransferase, mitochondrial OS=Rat... [more]
THIL_MOUSE9.603e-1134.09Acetyl-CoA acetyltransferase, mitochondrial OS=Mus... [more]
THIL_DANRE9.603e-1133.33Acetyl-CoA acetyltransferase, mitochondrial OS=Dan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101C11EF PostHarvP1 Citrus clementina cDNA clone C34101C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931090 ID=FC931090; Name=FC931090; organism=Citrus clementina; type=EST; length=757bp
GAGTGTCCTATAATTTCCCAAGTATATTTCAGGGGGCCAAAAAAAAAAAA
AAAAAAAAAAACAGGTACTATAACTTCNGGAGTAGATTCAAACCAGGAAA
GAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTT
CCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGA
ATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCC
GGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATA
GGAAGCCTGCTTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACT
GCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGA
TCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATC
CCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCA
ACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGA
AACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGG
CGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGT
ATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGG
CCAGTTAACCCCCAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCT
TCCTATG
back to top