FC931093

Overview
NameFC931093
Unique NameFC931093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15113 contig Ccv1_Contig15113:50..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 54/131 (41.22%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPR-------REDQSPSERQCCGQVEGVNSMESELDN 619
            S EQ+R+LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERDY  L+ +++ L +  +AL+++K AL+ ++++    L ++         +E++ P+         G     SE D+
Sbjct:   48 SVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGSSESDS 178          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  146 GGEYSPAAEPYSCMNEIXXXXXXXXXXXXXXXXFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQ 550
            G E+    E Y    E                  S  Q+++LE  FE E +LEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQLE+DY +L+  +++L   F++L+++ ++L+ ++ K    L      E++
Sbjct:   33 GREFQSMLEGYEEEEEAIVEERGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEE 167          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 46/94 (48.94%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKP 535
            EQ+R+LE  F+ + +L+P +K ++A++LGLQPRQVA+WFQN+RARWK+KQLERD+  L+A  + L +  +AL+++K AL  ++++  E L  KP
Sbjct:   79 EQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKLPTKP 172          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 47/87 (54.02%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 508
            S EQ+R+LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERDY  L+ ++++L    +AL+++K AL+ ++++
Sbjct:   56 SVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKE 142          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 47/87 (54.02%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  248 SDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 508
            S EQ+R+LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERDY  L+ ++++L    +AL+++K AL+ ++++
Sbjct:   56 SVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKE 142          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 46/85 (54.12%), Postives = 71/85 (83.53%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 508
            EQ+++LE  FE + +LEP +K++LA+ELGLQPRQVAIWFQN+RARWK+KQLERDY +L++NF+ L    ++L+++  +L+ Q+++
Sbjct:   79 EQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKE 163          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 43/85 (50.59%), Postives = 69/85 (81.18%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 508
            +Q+++LE  FE E +LEP +K +LA+ELGLQPRQVA+WFQN+RARWK+KQLE+DY +L+  +++L   F++L+++  +L+ ++ K
Sbjct:   66 DQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDSLRHNFDSLRRDNDSLLQEISK 150          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.090e-21
Identity = 47/95 (49.47%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNN-LASRFEALKKEKQALVIQLQKTNELLQNKP 535
            EQ+R+LE  F+ + +L+P +K ++A++LGLQPRQVA+WFQN+RARWK+KQLERD+  L+A  N+ L +  +AL+++K AL  ++++  E L  KP
Sbjct:   79 EQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIRELREKLPTKP 173          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 532
            EQ+  LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERD++ L+A+F+ L +  +AL ++   L  Q+    E LQ K
Sbjct:   84 EQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEK 176          
BLAST of FC931093 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  254 EQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 532
            EQ+  LE  FE E +LEP +K +LA++LGLQPRQVA+WFQN+RARWK+KQLERD++ L+A+F+ L +  +AL ++   L  Q+    E LQ K
Sbjct:   86 EQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEK 178          
The following BLAST results are available for this feature:
BLAST of FC931093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HOX20_ORYSI5.780e-2341.22Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATHB6_ARATH1.288e-2237.78Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
HOX13_ORYSJ3.747e-2248.94Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX4_ORYSJ4.893e-2254.02Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI4.893e-2254.02Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
ATHB5_ARATH4.893e-2254.12Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
ATB16_ARATH8.347e-2250.59Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX13_ORYSI1.090e-2149.47Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX16_ORYSJ1.424e-2152.69Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI1.424e-2152.69Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34101D02EF PostHarvP1 Citrus clementina cDNA clone C34101D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931093 ID=FC931093; Name=FC931093; organism=Citrus clementina; type=EST; length=710bp
GATAATTAAAACATGCACAGAGCACTTGACACAGCTTAAACATCCCCCAA
AAACACAGCCCCCTCTTTGAATGATTTTTTTTTAAAATTAGAATATACAA
AAATTATCTAGTCACCAGCACAAATTCCGACTAAAGATGTTAGATGGGGG
CGAATATTCTCCGGCGGCTGAGCCATACAGCTGCATGAACGAGATCACAA
CAACAACGACAACCAGAAAGAAGAAGTGCAAGAACAAGAGGAGGTTCAGT
GATGAACAGATCAGATCATTGGAACTCATGTTTGAAAACGAAACTAGACT
CGAGCCTCGAAAGAAGCTGCAGTTGGCTAAAGAACTTGGGTTGCAGCCTC
GTCAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCGAAG
CAGCTTGAACGAGACTACAACATACTTCAAGCCAATTTCAATAACCTTGC
TTCAAGGTTCGAAGCTCTGAAGAAAGAAAAACAAGCCTTGGTTATTCAGT
TGCAAAAGACGAATGAGTTGTTGCAAAATAAGCCACGACGGGAGGATCAG
AGTCCGAGTGAGAGGCAGTGTTGCGGTCAAGTTGAAGGTGTAAACAGCAT
GGAGAGCGAATTGGACAATGGAGACAGGGACACCAACAAGTGTGAATCAG
AAGTGAAGCCAAGCTTGTCAGCAGAACTGAAGCTAGGTGTTTTGTCAGAT
GATGATAGCA
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